BAC Information

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BAC

Clone NameMSMg01-379B11
Chromosome2 (Build37)
Map Location 47,857,356 - 48,047,411
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379B11.T7 (MSMg01no379_b11.b1)MSMg01-379B11.TJ (MSMg01no379_b11.g1)
ACCAG483786AG483787
length743782
length of high quality
(start - end)
540 (67 - 606)174 (71 - 244)
definitionCHROMAT_FILE: MSMg01no379_b11.b1 PHD_FILE: MSMg01no379_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:45 2005CHROMAT_FILE: MSMg01no379_b11.g1 PHD_FILE: MSMg01no379_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,046,874 - 48,047,411)(47,857,356 - 47,857,529)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAAGATTACCCCAAGCAATTTGGTAAAAATTACTTAGAGAAGAACAAAA
ACTGTAGCTTGATTGCTACTATTTTTGTGCAATTCAGTTTTTCAAATTAG
CTGCTCAAAGCTCATTGGTTAACTATTTTTTATTACATTTATTAACATTA
TAGGTGTGTGGGGTGTGGCATGGTGCACATGTGGAGGTCAGAGAAGAATC
AGAGGGAATTTGTTCTCACTGTCCAGCATATATTAAATTCAGGTTTTCAG
GCTTACTGGCAAGACTTTTACCTGATGAACCTTTGTACCAGCCATTATTG
ATAAGCCCTTATAAAAATTACAGATATTTTATCTTAAATACTTTCCAGCG
ATAATGTTGAATGTCTTCTTTGTATCAGGATTGTGAGAAGACCTTCATAT
ATATTATTTCCAGATTTTGGTGGAAAATAGAATACATAGAAAAAGAAATG
GAGTTTGGAGAATATAAACACAACCAAATTAATAACAATGATAATAATAA
TAACAACAAAAATAACATATAAATTCTTTTATTTCCTCTTAGGTCTATAA
TTCACACTGTTTTTTTAACACATCTTGACTTCTGAATCTTTTTTTTGTTA
CCTTTTTAGTACAGGATTTTTCCTTCCACATTCCCTTACTGCCAGTTATG
ATTTTTAAAACACCAATGTCGTTTTCATTTGACCACTGCCTTC
TCTTTGCTTTTTCTGTTGGTCGCCTGTTTCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTATAAAACAGCCAATTCCCCAAGCCATT
ACATTTAGAGACTGTTATTTGATCCAGCTTTCATCCCTTCTACATTGATC
TGTGTGGAAGAGCCTGAAGCTTTTGTCTTCCAAAGCCGATTGTAGTTTGC
ATTGTTTCCATTATATGGCGCAGGAGATATTTTTAAGCACTCAACAAACA
GGAACCTGTGAGATCTCTGTACTTGATCAACTACTATGTAAACACCAGCA
ATTCAAGCACCTTTGTAGAAGGAATCTGATTCAAATTGTTTCCTGGGAGG
AGTTATTTTATGACTTGTGAACCATCGCTCTTAAATGTTCCTATAAGGTG
ACTTCACATCGCTGGCAATTGAACTCAGTTGTCTCTTGCTTTACAGCCTG
ATTCTCTTTTCTTCCCTGGAGAATATAAACAGCTACTGCAAGTGCTGCAA
ATAATGCCGCAGGACTTTATTTTTTATGCTTTACTTTCCTCGCCCTTTCC
CCCCCCCCCTGTTTTACCCACCCCGCCTCTCTTCTCTTTTTTGTTTGTCC
GATTACCATCTATCACCTTGTCTGTCTCCCCTCTTCCTATTCTCCTTTTT
GTTTCCTCGCTTTCCCCCCCTCTTCTCTTCCTCCCCTTCTGTATAATATC
CTTTTCTTTTCGTCTAATCCTGGCGCTCACATTTTCCTTTTTCCTCTCCT
TATTTTCTCACGACCACCCTCTCTCCCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_b11.b1 MSMg01no379_b11.b1 CHROMAT_FILE:
MSMg01no379_b11.b1 PHD_FILE: MSMg01no379_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:45 2005
         (540 letters)



>mm_chr2_48046472_48047411
          Length = 940

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatttggtaaaaattacttagagaagaacaaaaactgtagcttgattgctactattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 caatttggtaaaaattacttagagaagaacaaaaactgtagcttgattgctactattttt 881

                                                                       
Query: 61  gtgcaattcagtttttcaaattagctgctcaaagctcattggttaactattttttattac 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 880 gtgcaattcagtttttcaaattagctgttcaaagctcattggttaactattttttattac 821

                                                                       
Query: 121 atttattaacattataggtgtgtggggtgtggcatggtgcacatgtggaggtcagagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 820 atttattaacattataggtgtgtggggtgtggcatggtgcacatgtggaggtcagagaat 761

                                                                       
Query: 181 aatcagagggaatttgttctcactgtccagcatatattaaattcaggttttcaggcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aatcagagggaatttgttctcactgtccagcatatattaaattcaggttttcaggcttac 701

                                                                       
Query: 241 tggcaagacttttacctgatgaacctttgtaccagccattattgataagcccttataaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tggcaagacttttacctgatgaacctttgtaccagccattattgataagcccttataaaa 641

                                                                       
Query: 301 attacagatattttatcttaaatactttccagcgataatgttgaatgtcttctttgtatc 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tttacagatattttatcttaaatactttccagcgataatgttgaatgtcttctttgtatc 581

                                                                       
Query: 361 aggattgtgagaagaccttcatatatattatttccagattttggtggaaaatagaataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aggattgtgagaagaccttcatatatattatttccagattttggtggaaaatagaataca 521

                                                                       
Query: 421 tagaaaaagaaatggagtttggagaatataaacacaaccaaattaataacaatgataata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tagaaaaagaaatggagtttggagaatataaacacaaccaaattaataacaatgataata 461

                                                                     
Query: 481 ataataacaacaaaaataacatataaattcttttatttcctcttaggtctataattca 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 460 ataataacaacaaaaataacatataaattcttttatttcctcttaggtctatcattca 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no379_b11.g1 MSMg01no379_b11.g1 CHROMAT_FILE:
MSMg01no379_b11.g1 PHD_FILE: MSMg01no379_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:45 2005
         (174 letters)



>mm_chr2_47857156_47857729
          Length = 574

 Score =  329 bits (170), Expect = 7e-95
 Identities = 173/174 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actataaaacagccaattccccaagccattacatttagagactgttatttgatccagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actataaaacagccaattccccaagccattacatttagagactgttatttgatccagctt 260

                                                                       
Query: 61  tcatcccttctacattgatctgtgtggaagagcctgaagcttttgtcttccaaagccgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatcccttctacattgatctgtgtggaagagcctgaagcttttgtcttccaaagccgat 320

                                                                 
Query: 121 tgtagtttgcattgtttccattatatggcgcaggagatatttttaagcactcaa 174
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tgtagtttgcattgtttccattagatggcgcaggagatatttttaagcactcaa 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)