BAC Information

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BAC

Clone NameMSMg01-379B17
Chromosome2 (Build37)
Map Location 160,816,665 - 160,817,158
singlet/doubletsinglet
Overlap geneChd6
Upstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3
Downstream geneLOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379B17.T7 (MSMg01no379_b17.b1)MSMg01-379B17.TJ (MSMg01no379_b17.g1)
ACCAG483798AG483799
length742770
length of high quality
(start - end)		494 (65 - 558)450 (70 - 519)
definitionCHROMAT_FILE: MSMg01no379_b17.b1 PHD_FILE: MSMg01no379_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:46 2005CHROMAT_FILE: MSMg01no379_b17.g1 PHD_FILE: MSMg01no379_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATGGTTCCCAGGATGGGCAATGTGGAGTATGATGTTTAGTAACACATG
CATAGCTAAGGATACAGAACATCTGCACTAAGATCTTAGCTCTATTTCTG
ATGCTCTAAGCCCAATGATGAAGGACTTTGATATGCTGTTCTGTACTTGA
GAACAAATTAAGAATTTTAGCAGTACTTCTTAACCATCTCCAATCCAGAC
CTAAAATATCTGTTGTCATTGTTTTGAGACTGGGTCTTAATATACCCAGG
TGGGCCTTGAAAATTCACTGCGTAGCAGAGGCTTGCCTTGGTCGCCTGGA
TGTCCTGCTTCCACTTCCCATGTGCTGGGAGTATAAGTGTGGGTTACTAT
GCCCAGCTGGACAAAGAGGTTAACTGCCATACTTCAAGCTAATTTGTTTG
TTTATTATTCACTGATCATCATAAAATGAACACCTTTGAAATGCTGTACA
CTGTCAGGGCCATAGGGACAGACAACACTGACTCCCTCACATCACCAAGG
TCAAGGTCAAGCTGGAGAGATGCCTCGGTGGTTAGAGCACTTGCTGTCTA
CAGAGGAATGGTCCAGCCCCACATGACAGATAACACTATTTGAAATTCCG
TCCCAGGGAAGGGAACCCTTTCCTGGATCTGGGGTTCCCAGGGTACCATG
GTACCATGTTTACTGCGGGAAACCCTCCTCCCCTCCCCCTAG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAGAAGTAGGCTCTAATGCCATTGTAGGA
ACAGACTTGCTAGCAAGGTGAGAAAAACCAGGCAAAGAGCAAAAGCTTCT
TTCTTCCATGTCCTTTTATAGGCTTCGAGCATAAGGCGTGGTCCAGATTA
AAGGCATGTGTCTTCCTGCTTCAGAGGTCCCAACTCAAAGTGAACTCACC
CATTTCAAACAAAGCAGAAAATCTCTCACAGGTGTGCCCTCTGTTTCTAG
ATCATAGGTCATTCCAGATGTAGTCAAGGTGACAAATGAAAGAACCTAGT
GGGGAAACCTCCACTCAGCTCCTGATTCGGCGTGCACCCAAGAATCACGA
ATAGAACACGACACCTTGATGTAACAACACGAGGTATTTTAATGGCGGAG
CTCCGGGTCGAAACGTATCTCACACAGGAGACAGTGGATTTGACCACGAG
GCTTGGAAGCTAGGGGTTTTTATAGAAAAGGAGTGGGGCTGGGGGAGGAA
CTGTCTCGGCCTCTCCTGTTCGGCCCTCCTCACCATCACCTCCCTTGTAC
TTTTTCCTTTCCTTCTTTACTACTTCCTTATCCCCCTCTTCCTTGTTCCT
CTTTTTTTTCTCCCTTTCCTCCCTTTTCCCCCCCCTCCTTTTATTTTTTT
CCTCTCCTTTCCCCTCCTCTCCCCTTACCTTTCCTTTTCCTCCCTTTTCC
CCCCCCCCCTTTCTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_b17.b1 MSMg01no379_b17.b1 CHROMAT_FILE:
MSMg01no379_b17.b1 PHD_FILE: MSMg01no379_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:46 2005
         (494 letters)



>mm_chr2_160816465_160817358
          Length = 894

 Score =  948 bits (490), Expect = 0.0
 Identities = 493/494 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggcaatgtggagtatgatgtttagtaacacatgcatagctaaggatacagaacatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggcaatgtggagtatgatgtttagtaacacatgcatagctaaggatacagaacatct 260

                                                                       
Query: 61  gcactaagatcttagctctatttctgatgctctaagcccaatgatgaaggactttgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcactaagatcttagctctatttctgatgctctaagcccaatgatgaaggactttgatat 320

                                                                       
Query: 121 gctgttctgtacttgagaacaaattaagaattttagcagtacttcttaaccatctccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgttctgtacttgagaacaaattaagaattttagcagtacttcttaaccatctccaat 380

                                                                       
Query: 181 ccagacctaaaatatctgttgtcattgttttgagactgggtcttaatatacccaggtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagacctaaaatatctgttgtcattgttttgagactgggtcttaatatacccaggtggg 440

                                                                       
Query: 241 ccttgaaaattcactgcgtagcagaggcttgccttggtcgcctggatgtcctgcttccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgaaaattcactgcgtagcagaggcttgccttggtcgcctggatgtcctgcttccac 500

                                                                       
Query: 301 ttcccatgtgctgggagtataagtgtgggttactatgcccagctggacaaagaggttaac 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ttcccatgtgctgggagtataagtgtgtgttactatgcccagctggacaaagaggttaac 560

                                                                       
Query: 361 tgccatacttcaagctaatttgtttgtttattattcactgatcatcataaaatgaacacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccatacttcaagctaatttgtttgtttattattcactgatcatcataaaatgaacacc 620

                                                                       
Query: 421 tttgaaatgctgtacactgtcagggccatagggacagacaacactgactccctcacatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgaaatgctgtacactgtcagggccatagggacagacaacactgactccctcacatca 680

                         
Query: 481 ccaaggtcaaggtc 494
           ||||||||||||||
Sbjct: 681 ccaaggtcaaggtc 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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