BAC Information

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BAC

Clone NameMSMg01-379B22
Chromosome2 (Build37)
Map Location 164,082,125 - 164,260,191
singlet/doubletdoublet
Overlap geneSvs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4
Upstream geneLOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2
Downstream gene2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379B22.T7 (MSMg01no379_b22.b1)MSMg01-379B22.TJ (MSMg01no379_b22.g1)
ACCAG483808AG483809
length775785
length of high quality
(start - end)		509 (39 - 547)330 (70 - 399)
definitionCHROMAT_FILE: MSMg01no379_b22.b1 PHD_FILE: MSMg01no379_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:47 2005CHROMAT_FILE: MSMg01no379_b22.g1 PHD_FILE: MSMg01no379_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:48 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(164,082,125 - 164,082,629)(164,259,862 - 164,260,191)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
CATCAACCCACTGCTGTACCCAGGCATGTGGATGTGGGTGGAGAAGACAA
CGTCCATCCAGAAGGTCACCCCGTGGAGGGTTCTCTCACTGCCATGGCAT
CCTTATGGACATTCTCCCTGAGTGCCTCTCTGCAGCTGCTCCCTGAACTC
ACCATAGAGTTCTATCCCAGCTGCTTTCTTCTCCAGAAGGAGGAGCAGAG
AAAGGCTGAAGAAGATGGACTTCATCTTACCAGGAAGGGCCTTCACTGAG
ACCTCAGCTGATCTTCTCATTTATATGTTCTTTTCTGGGTGCAGAAAGGT
GGCTGAAGTCACAAAAGGCATTCATTGTCTGTCCTTACTTATCTGGCTTG
TTGGCTTCTCCCTTTTTCTCAGTAGGAGATGTTGTAAACATTCCTAGAGA
CTGGAGATACAGTATGTCAGAGTCTTTGTCTTACCCCCATTGCCCCAGGA
GATCTTTAAAGCTTTATCGTCATCTCAAGATCATCACATGATGTTTCCAG
GAGAANTTCAAGGCAGAGATCACAGGAGTAACTAGGGCCTATCCCAGATT
TATTAATTCAAGTGGGGGGTCTTGTCCACAGGGTCCTGTAAAAAAAAAAA
ACAAGCACTTTTGCTTCTTTTCCTATCGAAAGGGACCCCATCTATTTTCT
GGGAAATACTAAAGGTAATAAGGTGAGTTTTTTGCATCCCCCAAAACATT
TCTATAATCCTACGTTTTCCCGCCG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGGTCTCTAGCTATCGGCACTAGGTCAGAT
TTCTATCAGCTACGAGGCCAGCAAGAACCTCTGCACCAGGCCCAACCCAC
CACCTTATTCACCCAGCTTCTGGTTGTGTTTGTGAAAGGGACAGAGATGA
GACCTGAGGACCCAGAGGGTGTGCATGTGCGTGCATATACACGTGGACAC
ACGTTCCTGGGCAGGGTTGGGTGAGCGGAGGTGAACAGACCACATCTGTA
GTCAGGAGCAAGGCTGGATCCCCCTCTGGTTAAGGTTGGGTTGGCCTGCT
GGGTGGCCTGGTTTTTCAAAGCCACCCCAGACTACTGAATGGACCTTGTT
TGAAAAGACAGCGCCGTTAAGGTGAGGCCCTTCCTTCTCTTTCCTCTTTT
CTTTTTGTTCCTCCTCCTCTTCCTCTCTTTCTTGTCTCTTCCCCGTTTCC
CACGTCTTTTTTTCTTTAACTCCCTTCTTCTTCCTTCCTACACTCCTTTC
CCATTATATCTTTGTAACCGAGTCTCTTTTTTTTTGTTTATTATTTTTTA
CCTCCCTCTCTTTTCTCACAATCTACACTCTCCATTCCGTTTTTACCTTC
CCTCTTTTTTCCTCCCCCTATCCTTTTCCCTTATTCTAACCTCCTCTGTC
CCCCCTTATATTCTTTTTAACCCTTCTGCTCTCCTTTTTCAATTTTTACC
CGCCTTTCCTTCTTTTTACCCATACCTATCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_b22.b1 MSMg01no379_b22.b1 CHROMAT_FILE:
MSMg01no379_b22.b1 PHD_FILE: MSMg01no379_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:47 2005
         (509 letters)



>mm_chr2_164081921_164082829
          Length = 909

 Score =  953 bits (493), Expect = 0.0
 Identities = 502/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccatcaacccactgctgtacccaggcatgtggatgtgggtggagaagacaacg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccatcaacccactgctgtacccaggcatgtggatgtgggtggagaagacaacg 264

                                                                       
Query: 65  tccatccagaaggtcaccccgtggagggttctctcactgccatggcatccttatggacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccatccagaaggtcaccccgtggagggttctctcactgccatggcatccttatggacat 324

                                                                       
Query: 125 tctccctgagtgcctctctgcagctgctccctgaactcaccatagagttctatcccagct 184
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctccctgagtgcctctctgtggctgctccctgaactcaccatagagttctatcccagct 384

                                                                       
Query: 185 gctttcttctccagaaggaggagcagagaaaggctgaagaagatggacttcatcttacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctttcttctccagaaggaggagcagagaaaggctgaagaagatggacttcatcttacca 444

                                                                       
Query: 245 ggaagggccttcactgagacctcagctgatcttctcatttatatgttcttttctgggtgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaagggccttcactgagacctcagctgatcttctcatttatatgttcttttctgggtgc 504

                                                                       
Query: 305 agaaaggtggctgaagtcacaaaaggcattcattgtctgtccttacttatctggcttgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaaaggtggctgaagtcacaaaaggcattcattgtctgtccttacttatctggcttgtt 564

                                                                       
Query: 365 ggcttctccctttttctcagtaggagatgttgtaaacattcctagagactggagatacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcttctccctttttctcagtaggagatgttgtaaacattcctagagactggagatacag 624

                                                                       
Query: 425 tatgtcagagtctttgtcttacccccattgccccaggagatctttaaagctttatcgtca 484
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 tatgtcagagtctttgtcttacccccactgccccaggagatctttaaagctttatcgtca 684

                                    
Query: 485 tctcaagatcatcacatgatgtttc 509
           |||||||||||||||||||||||||
Sbjct: 685 tctcaagatcatcacatgatgtttc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_b22.g1 MSMg01no379_b22.g1 CHROMAT_FILE:
MSMg01no379_b22.g1 PHD_FILE: MSMg01no379_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:48 2005
         (330 letters)



>mm_chr2_164259662_164260391
          Length = 730

 Score =  607 bits (314), Expect = e-178
 Identities = 326/330 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtctctagctatcggcactaggtcagatttctatcagctacgaggccagcaagaacc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 530 agggtctctagctatcggcactaggttagatttctatcagctacgaggccagcaagaacc 471

                                                                       
Query: 61  tctgcaccaggcccaacccaccaccttattcacccagcttctggttgtgtttgtgaaagg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 470 tctgcaccaggcccaacccaccaccttatttacccagcttctggttgtgtttgtgaaagg 411

                                                                       
Query: 121 gacagagatgagacctgaggacccagagggtgtgcatgtgcgtgcatatacacgtggaca 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 410 gacagagatgagacctgaggacccggagggtgtgcatgtgcgtgcatatacacgtggaca 351

                                                                       
Query: 181 cacgttcctgggcagggttgggtgagcggaggtgaacagaccacatctgtagtcaggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cacgttcctgggcagggttgggtgagcggaggtgaacagaccacatctgtagtcaggagc 291

                                                                       
Query: 241 aaggctggatccccctctggttaaggttgggttggcctgctgggtggcctggtttttcaa 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aagactggatccccctctggttaaggttgggttggcctgctgggtggcctggtttttcaa 231

                                         
Query: 301 agccaccccagactactgaatggaccttgt 330
           ||||||||||||||||||||||||||||||
Sbjct: 230 agccaccccagactactgaatggaccttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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