BAC Information

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BAC

Clone NameMSMg01-379F02
Chromosome2 (Build37)
Map Location 28,753,215 - 28,908,707
singlet/doubletdoublet
Overlap geneDdx31, Barhl1, LOC100033452, 1700101E01Rik
Upstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4
Downstream geneLOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379F02.T7 (MSMg01no379_f02.b1)MSMg01-379F02.TJ (MSMg01no379_f02.g1)
ACCAG483959AG483960
length742779
length of high quality
(start - end)		531 (42 - 572)328 (72 - 399)
definitionCHROMAT_FILE: MSMg01no379_f02.b1 PHD_FILE: MSMg01no379_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:03 2005CHROMAT_FILE: MSMg01no379_f02.g1 PHD_FILE: MSMg01no379_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,753,215 - 28,753,742)(28,908,380 - 28,908,707)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACAGTGACCTTGAGCTTCCTCCACACCTGAGTCACCTGCAGACAGCAGG
AGCCATAGGGTATGCTTTCTGTCACACAGTCAAGGCTGACAACAAAGAGC
AGGAACCCAGTCAGCCTCTCCTGGGAGATAGGAGATGGTGATGTTTGTTG
CTAGAGTTATCCAAGCACTGGAATTGGAAGCTGTAGCTGGTCTCAAAAAC
TGGTCATACCAAGATGAGGCAGTATGCAACAGGAGAATGGCTCTCATTAA
ACATTGCCTGCTCTGGCTTACCTGGCTCCTGTCATTCAGAAAGCCAAGAG
AGCATGATAGCCCTAGCTCTCCCTCTGCTGCCCAGTTTACTTTTCTTCGC
CCTAACAGCCCTCCCCAACTCCTGCTAAGCCACCTCTGCAGTAGGAGGGT
GCACAACCCAACCCAGCCCACTCCTCAGTCTGCTCTCCAGAAGCTGAGAC
CTTCCATTCTGATTGTGACCTCTATGAACTGTCTCCCTTTATTCTGGCCC
TGAATTCCTATAAGTAGCAGTCCAAAAAATAAGATTAACTTTTTGACCCT
CAAGAAGAGGGTGCCACTCTATGCGGAGGAGTACATCTTTTATCCTATCA
GAGTCTGGTGGATCTCTATGAGTTCCAGTTCAGCCTGTTCTACACAGTGA
GTTCCAGGAGAGCCACGTTTTTGTCGAAATATCTTGTTTCAA

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCCTTGTTTCTAGAGCTGGAGTTTAGA
ATGATCATGTTTTTAAAAATATGAGTGATGATTGCTCCACCAGTGGGGTT
CTGTTTTCAGGCTGTCCTGGTCCCTGGTGACCAATGGCAGGGGCCACATC
CTGATGCGCTTTGGTGACAGGGCTTGGGACACTCTGGTACAAGTGGCAGC
AGGGGGCAGTCTTTTCCTCCAATTGTTTTTGGTGTTTGAAACTCAGCTAA
CTGTTAGGATGATGATGTCTGCATTCAGTATTTACCCCTTCCTGTAAGAT
CTTCCGTCAAAACTCAGCCTGTATAAAAGTTGCCAGAGAGAGAATGTGAA
AAAGAAGTCAGCTTCTCCCTGTTGCAGATACTCCTTAAAAACCAGTGCAT
GGGGAAATGTCTGCAAGGCTTTGTATTCAGGTTCTGACTTAGCTGGCTTA
AAAGCCCCGCCTAATATGCCAGCACTACTTTCTCTATGCGAAAATACCAT
TTTGAATTCTGAAACACAGGGTTGTGGCCATACTTTTTTAAAATGCACTT
TTTACTCGTATTTTACTTTTTTAAGACCATTTTTATATTATTACTTTTAA
TCTTCTCTTCTTCAATCCTTGTCTCATCTTTTCCGACTTCCCTTATTTAT
TCTGTCTACTTTATGTTTGCCTACCACATTATTTTTCTGCTAACACCTTA
TTCCCTCTTTTTCTATATACTTCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_f02.b1 MSMg01no379_f02.b1 CHROMAT_FILE:
MSMg01no379_f02.b1 PHD_FILE: MSMg01no379_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:03 2005
         (531 letters)



>mm_chr2_28753012_28753942
          Length = 931

 Score = 1021 bits (528), Expect = 0.0
 Identities = 528/528 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagtgaccttgagcttcctccacacctgagtcacctgcagacagcaggagcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagtgaccttgagcttcctccacacctgagtcacctgcagacagcaggagcc 263

                                                                       
Query: 64  atagggtatgctttctgtcacacagtcaaggctgacaacaaagagcaggaacccagtcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atagggtatgctttctgtcacacagtcaaggctgacaacaaagagcaggaacccagtcag 323

                                                                       
Query: 124 cctctcctgggagataggagatggtgatgtttgttgctagagttatccaagcactggaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctctcctgggagataggagatggtgatgtttgttgctagagttatccaagcactggaat 383

                                                                       
Query: 184 tggaagctgtagctggtctcaaaaactggtcataccaagatgaggcagtatgcaacagga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggaagctgtagctggtctcaaaaactggtcataccaagatgaggcagtatgcaacagga 443

                                                                       
Query: 244 gaatggctctcattaaacattgcctgctctggcttacctggctcctgtcattcagaaagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaatggctctcattaaacattgcctgctctggcttacctggctcctgtcattcagaaagc 503

                                                                       
Query: 304 caagagagcatgatagccctagctctccctctgctgcccagtttacttttcttcgcccta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagagagcatgatagccctagctctccctctgctgcccagtttacttttcttcgcccta 563

                                                                       
Query: 364 acagccctccccaactcctgctaagccacctctgcagtaggagggtgcacaacccaaccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acagccctccccaactcctgctaagccacctctgcagtaggagggtgcacaacccaaccc 623

                                                                       
Query: 424 agcccactcctcagtctgctctccagaagctgagaccttccattctgattgtgacctcta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agcccactcctcagtctgctctccagaagctgagaccttccattctgattgtgacctcta 683

                                                           
Query: 484 tgaactgtctccctttattctggccctgaattcctataagtagcagtc 531
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgaactgtctccctttattctggccctgaattcctataagtagcagtc 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_f02.g1 MSMg01no379_f02.g1 CHROMAT_FILE:
MSMg01no379_f02.g1 PHD_FILE: MSMg01no379_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:03 2005
         (328 letters)



>mm_chr2_28908180_28908907
          Length = 728

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catccttgtttctagagctggagtttagaatgatcatgtttttaaaaatatgagtgatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 catccttgtttctagagctggagtttagaatgatcatgtttttaaaaatatgagtgatga 469

                                                                       
Query: 61  ttgctccaccagtggggttctgttttcaggctgtcctggtccctggtgaccaatggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttgctccaccagtggggttctgttttcaggctgtcctggtccctggtgaccaatggcagg 409

                                                                       
Query: 121 ggccacatcctgatgcgctttggtgacagggcttgggacactctggtacaagtggcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 408 ggccacatcctgatgcgctttggtgacagggcttgggacactctggtacaagtggcacca 349

                                                                       
Query: 181 gggggcagtcttttcctccaattgtttttggtgtttgaaactcagctaactgttaggatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gggggcagtcttttcctccaattgtttttggtgtttgaaactcagctaactgttaggatg 289

                                                                       
Query: 241 atgatgtctgcattcagtatttaccccttcctgtaagatcttccgtcaaaactcagcctg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atgatgtccgcattcagtatttaccccttcctgtaagatcttccgtcaaaactcagcctg 229

                                       
Query: 301 tataaaagttgccagagagagaatgtga 328
           ||||||||||||||||||||||||||||
Sbjct: 228 tataaaagttgccagagagagaatgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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