Query= MSMg01no379_n13.b1 MSMg01no379_n13.b1 CHROMAT_FILE:
MSMg01no379_n13.b1 PHD_FILE: MSMg01no379_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:42 2005
(500 letters)
>mm_chr2_43146656_43147555
Length = 900
Score = 888 bits (459), Expect = 0.0
Identities = 489/499 (97%)
Strand = Plus / Plus
Query: 1 gtcaaagcaaaacccaatgtcttcttgcccagaaatacaaaggccgtataagatggagac 60
|||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 201 gtcaaagcaaaatccaatgtcttcttgcccataaatacaaaggccatataagatggagac 260
Query: 61 agtgacagagtggcacgaggctaccttttaatacaagagagtctctgactaatgtccaca 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 agtgacagagtggcacgaggctaccttttaatacaagagagtttctgactaatgtccaca 320
Query: 121 aaaatctcttgacaataagaaggaataacaaacatatttgtctaacttctttttaaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatctcttgacaataagaaggaataacaaacatatttgtctaacttctttttaaaaac 380
Query: 181 caattacaagtttcactttcagagaataatatttctttcccaagttcacttcatctaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattacaagtttcactttcagagaataatatttctttcccaagttcacttcatctaaaa 440
Query: 241 ataatcagcactatagatatcttttgtaagtgacgttgttaatttacatttaagaactat 300
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatcagcactagagatattttttgtaagtgacgttgttaatttacatttaagaactat 500
Query: 301 tttacaagttccacctggtttctgtcaaaaagactgcaatgacatctgttagacactgtc 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tttacaagttccacctggtttctgtcaaaaaggctgcaatgacatctgttagacactgtc 560
Query: 361 agtagttcctgaaaattcaaagaaactaaagcttccccactctatttgcaatcactaaat 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 agtagttcctgaaaattcaaagaaactaaagcttccccactccatttgcaatcactaaat 620
Query: 421 gattaattgggatttctttcccattgaatacatgtactgtcaggttaaacagatatttac 480
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 621 gattaattgggatttctttcccattgaatacatgtactgttaggttaaatagatatttac 680
Query: 481 taatctaatataataaaga 499
|||||||||||||||||||
Sbjct: 681 taatctaatataataaaga 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_n13.g1 MSMg01no379_n13.g1 CHROMAT_FILE:
MSMg01no379_n13.g1 PHD_FILE: MSMg01no379_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:42 2005
(485 letters)
>mm_chr2_43272383_43273267
Length = 885
Score = 901 bits (466), Expect = 0.0
Identities = 478/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 4 tatattcaaagcttgagatcacaagattatgtatatcaagacagctgtgcagtttttaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tatattcaaagcttgagatcacaagattatgtatatcaagacagctgtgcagtttttaaa 826
Query: 64 ataattctatcctttttgaattaacactattttttcccctctccatgtggattcactttg 123
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 825 ataattctatcctttttgaattaacacta-tttttcccctctccatgtggattcactttg 767
Query: 124 aatataaagtatttgcctaatcaaaacctaggcaagaaactgagcacttgaagtgcataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aatataaagtatttgcctaatcaaaacctaggcaagaaactgagcacttgaagtgcataa 707
Query: 184 tgtatttccttgtccaatggacaatggtggccaaagagagattgagaatttggaaataaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgtatttccttgtccaatggacaatggtggccaaagagagattgagaatttggaaataaa 647
Query: 244 tcttacttcatagtgttttccttttcatgaaaactgctagtggggagagatgtggggaac 303
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 646 tcttacttcatagtgttttccttttcatgaaaactgctagtggggagacatgtggggaac 587
Query: 304 ggcgagcacagtagctgttagacattaaatataggacaaaaaaggctggggaccgatccc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggcgagcacagtagctgttagacattaaatataggacaaaaaaggctggggaccgatccc 527
Query: 364 accgtgcagcatccatgagctttctagccagtgaacaataaacagcaaattatgactagc 423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 accatgcagcatccatgagctttctagccagtgaacaataaacagcaaattatgactagc 467
Query: 424 acagatggttcttttacttgggaaaaaggaaataaattggaagtgaaacccttctataag 483
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 466 acagatggttcttttacttgggaaaaaggaaacaaattggaagtgaaacccttctataag 407
Query: 484 ac 485
||
Sbjct: 406 ac 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
