BAC Information

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BAC

Clone NameMSMg01-379P21
Chromosome2 (Build37)
Map Location 13,268,904 - 13,269,340
singlet/doubletsinglet
Overlap geneCubn
Upstream gene2310047O13Rik, LOC100040837, Pter, C1ql3, Rsu1
Downstream geneTrdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379P21.T7 (MSMg01no379_p21.b1)MSMg01-379P21.TJ (MSMg01no379_p21.g1)
ACCAG484473AG484474
length1,403784
length of high quality
(start - end)		---431 (71 - 501)
definitionCHROMAT_FILE: MSMg01no379_p21.b1 PHD_FILE: MSMg01no379_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:55 2005CHROMAT_FILE: MSMg01no379_p21.g1 PHD_FILE: MSMg01no379_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCCGTGGCCTCTTNTGCGTCCGCTGTCACTGCCATAACTTCTTCACATA
TAGATGTAAGAGAAGAGGAATAATAAACTAAATAAATAACCTCCACATTA
TTTTAAAAGAAATAATGCAAGATATTATATATAGAGGAGTGTATATGATT
ATAGACTACAGCCTGTACACCGCTTATATCCCTCTCGATGCGCGTCTTAT
GAGGTCTTTTAACTCGCCGCTCGCTCTCCTGCCCCGCCTTTGTTCTCTAC
TAGTTGGACGCGAGCGAAGTCGCCGTCGTGAACTAAACGCTTAACTCTTG
GACTAGACCCTCTATCTACATGTACCTGCATATACAATGTAATAGGTTAT
GGCGCAGCCCGAGCGCTCATAGTAAGAGTTCAGGCGGGGCNTTATCCGAC
ATATAGATGAACCCGGCATNCGCAGCTCTCGCCCGTATTAACTTATTCCC
GAATTCGCCATAAGAAGACCGTACATGGCGCGTCGGCGGGCGCGACGGGC
GACGACGTCAGGAGAGCGCTGATATGATAGTCGAGAGCGCGGGCCCCCGC
TAGTGCTTCGCCACGGCGCATGTGCGACCGCGCAGGCGCGTTGTCTGCCT
CCGCCAGCCGTCTTAGTATACTATACCCCCGGCCCCTCGATCGCATATAN
ATATATGAAACAAACAGTGAGAGTGAACGGCAACGTGTGTAGAGACTATG
TCGGGTGTGCGCTATGATACACGACGTCATCTACACTATGCAATAACTAT
CCTTATTACTCTTTAGTTACTATCTATCTATTCCACCGAGACNATTATAA
CCGCACCGCGTGCGCGCGACTGTCGAGATTGATATATAATTAACATGCTA
TAGACTGACAGACGCCTCGCCCGCTATGAGTGATACGCCCCGCGCCATGT
TCTATGCGTGTGCCGCACCAGCTAGTTATGTGCCATACTAATGTGATAGC
CGTATTATAGATGCCGCATACAGTAAACATATGCGCTGTGACGGATTAAT
GTGCCTGAGAATGAGCGTATGACCGAGTCACTATCGACGGCGAATGNGTC
GCTCAGCACACGATATTGCATTATGTACCAAGTATGACGATTGTCNCGAA
CACNCACGTTTGTATGGCGCGACACTAGCGCTGACGTAGCGAGGCTGTAG
ATTACACGNTCGTGCACACTCCGATGTATCTACCGCGCTATTTATAGCGA
CGCGTACTCATGATGAGGACGACNCGTCTCGACGCGTATTATATTCGCAC
TGATCTACTCACGTCGCGACATATCGTAATTATGATGNTGTGTGCTATAN
TNTCCNTACTCTCACCATGTAGNCGATCTCGCCATACCGAATAGAGCACA
CCGTATATGATCTCGTATAATATGCGCGTCGCGTCGACNTCCCGTCCTAT
ACT

ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGACTTATCTCACTCAAAGGACCTTCTTT
TTTCTCTGTAGAATGTGCTATCCCTGACATTTTGGTATAGGTAAAATTTA
ATACTCGCCCTATATTCTCTAAACATTGTAGCTATTTATTCTATTTGATG
GCTTTCTTGGTTATAGTATCTATGAAATTCTATACAAAATGTATGGAGCT
AGTATAAAAATAAAACAGTAATTTCAGAGTTTAAGGAGTTGTTTCTACAA
TGTTTCTTACCATCTTTTATGATCAGCTTGTCATAGGAACAAGATAGCTG
AGCTTCAATGTCCATGGAGAGAATGTTGAGTTCCACAGTAGAATCAGGAG
CATAAATGATCCATATACAGTCAGCACCATTACCATATGGTCCAGGCCAA
CCCGGGGAGAAAAAAAAGACAGGGGTGTCTCCTGTCACCATATACCCTCC
ACAAGCTCCTGTGAAATGAAAAACAACGTCTTTAAGCACTTGTCCTAAAA
GTGCTTCAAAGGGGCTGCCCATTGGGATTTGAAATAATACCCCGTTAAAA
GCTGTCCTGGCTCTTCCAAAAAACCTAGTCTATTTCCAAAACTACATCTG
GGGGTTCCAACCACCTCCATTTTAGGAAATTCAATTCCCCTTCGGGCCGG
AGTGGCGAAAATTTTTTAACCAACTATATCAAACCTCTCCCCCCCTTTTT
ATTAAAATTTATTAATTTGTTCACCCCCGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_p21.g1 MSMg01no379_p21.g1 CHROMAT_FILE:
MSMg01no379_p21.g1 PHD_FILE: MSMg01no379_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:55 2005
         (431 letters)



>mm_chr2_13268710_13269540
          Length = 831

 Score =  777 bits (402), Expect = 0.0
 Identities = 426/438 (97%), Gaps = 8/438 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacttatctcactcaaaggaccttcttttttctctgtagaatgtgct-------atcc 53
           ||||||||||||||||||||| |||||||||||||||||||||| | ||       ||||
Sbjct: 195 cagacttatctcactcaaagggccttcttttttctctgtagaattt-ctctgtagaatcc 253

                                                                       
Query: 54  ctgacattttggtataggtaaaatttaatactcgccctatattctctaaacattgtagct 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgacattttggtataggtaaaatttaatactcgccctatattctctaaacattgtagct 313

                                                                       
Query: 114 atttattctatttgatggctttcttggttatagtatctatgaaattctatacaaaatgta 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atttattctatttgatggctttcttggttatagtatctatgaaattctatacaaaatgta 373

                                                                       
Query: 174 tggagctagtataaaaataaaacagtaatttcagagtttaaggagttgtttctacaatgt 233
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 374 tggagctagtataaaaataaaacagtaatttcagagtttaaggagtggtttctacaatgt 433

                                                                       
Query: 234 ttcttaccatcttttatgatcagcttgtcataggaacaagatagctgagcttcaatgtcc 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttcttaccatcttttatgatcagcttgtcataggaacaagatagctgagcttcaatgtcc 493

                                                                       
Query: 294 atggagagaatgttgagttccacagtagaatcaggagcataaatgatccatatacagtca 353
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 494 atggagagaatgttgagttccacagtagaatcaggagcataaattatccatatacagtca 553

                                                                       
Query: 354 gcaccattaccatatggtccaggccaacccggggagaaaaaaaagacaggggtgtctcct 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcaccattaccatatggtccaggccaacccggggagaaaaaaaagacaggggtgtctcct 613

                             
Query: 414 gtcaccatataccctcca 431
           ||||||||||||||||||
Sbjct: 614 gtcaccatataccctcca 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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