BAC Information

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BAC

Clone NameMSMg01-380B01
Chromosome2 (Build37)
Map Location 81,274,608 - 81,275,205
singlet/doubletsinglet
Overlap genenone
Upstream geneFrzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380B01.T7 (MSMg01no380_b01.b1)MSMg01-380B01.TJ (MSMg01no380_b01.g1)
ACCAG484529AG484530
length759757
length of high quality
(start - end)
596 (36 - 631)598 (64 - 661)
definitionCHROMAT_FILE: MSMg01no380_b01.b1 PHD_FILE: MSMg01no380_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:01 2005CHROMAT_FILE: MSMg01no380_b01.g1 PHD_FILE: MSMg01no380_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCA
TGATTATCTGGGTTCATCCAAAAGGCATGGGTCACTTCTCCACATCTGAC
CTCTGTAGCACTCTAGGTTTTCCTTGACTCTACTCCACTGCTGCTGCTTT
TCTTGGTGATATCCCATGGTACTGGCACCTCCAACTCCTGGAAGCTTTTA
CTGCAACTAGGCTTCACCAATAGCCTCTTATAGGCTCCTTTCATGGTGCC
AAGCCTCAACTTCTTTACATGACTCCTTTATCCTGGGCCATTAACTGCAA
CTGAGGCTGCAACTTCACCAATGGCCTTCCCTGGACTCCCACAGTGCCAA
GCCTCAGATGCTCTTCATGACCCTTCATGCCTTCAAAACCAGTACCACTT
GGGTGATTCTTACATATTACCAAGTCCAGCTGTAGCATGAAGTATGACCT
TGGCTATCTCTGTAATACAGCTTCTTTATGCTCTTAGAAAACTCTTCCCA
AAAGATTTCACCCCAGTGATGTTAATCTCTTCTTAATCACCACTAAATTC
TTTGCTCCAGCTAAACAGCATCAGTTGTCCCAGTAGTCCCCTCTATGGAG
TCTAAAGCCATATGGCTAAAGCTGCTGAGTTCTGTTGTTTGCTGGAGCTG
GAATATGGACCCCTTGCTCTATTATGCTATCACCATCCTTTCTGTTTTCT
AACTCACTCATTGCCCAAACTTGCCTGTCTTAAACCTTGCTTCAAATCTT
GACTTTGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAATGGTCTTCATTATTTAAGTAAAGCACAAAAGACTT
CTTATGGAACATGATAGAACTGGTTTTCTATGTGATTTTTAAGTTGTTTT
CAAACCCCCAGTGCCTGAAACTTGTTTATTCTAAGTACTGACTAATATGT
GTGTATGGATTAATAGTTTATGTTTATGGTACTGAAATCAGGGGCAGGGG
CATGAGCCAAAGAAAGGGAGCTAAAATATTTGTGGTAGTATCATCCAGGT
CTGTCAGCAAGTTGTTGTGTTGTTCATTTTGTATAAAAACAAGCTAGTGC
TTCTTACTCCAGTATATATACTCCTCCTTAACTTAAAATAGAGGACTTAG
ACCTGCGTCAGAGATGGCTATGTTAACATCTGCATATTCATTGTCATCAG
AGTTATTGTAAACATAGTCACTCATGGAAACAATTAATACTCTTCCATTG
TAGTAGATAAAAACAAGACTAGAAGTCAGTGGAGACAATTTATTTTATTT
TTTATGTCTGTGAAACCATTCCAATTTTTCTTATGGATATTCCTGATTGT
CCTTACATATATTTACATTGCTTCTTTTTATACATGTTAGAACAGGTTGC
TTATTTTGACCATATACAGTACTCAAAGTAAGACCTTGGATAAGTCTCAG
CAAAGAATCCCATAATGTCCTACAAAGTGTTTTGTACCTAACAAATTTTG
AACACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_b01.g1 MSMg01no380_b01.g1 CHROMAT_FILE:
MSMg01no380_b01.g1 PHD_FILE: MSMg01no380_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:01 2005
         (598 letters)



>mm_chr2_81274408_81275405
          Length = 998

 Score = 1089 bits (563), Expect = 0.0
 Identities = 590/599 (98%), Gaps = 2/599 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggtcttcattatttaagtaaagcacaaaagacttcttatggaacatgatagaactgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aatggtcttcattatttaagtaaagcacaaaagacttcttatggaacatgatagaactag 260

                                                                       
Query: 61  ttttctatgtgatttttaagttgttttcaaacccccagtgcctgaaacttgtttattcta 120
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttctatgtga-ttttaagtcgttttcaaacccccagtgcctgaaacttgtttattcta 319

                                                                       
Query: 121 agtactgactaatatgtgtgtatggattaatagtttatgtttatggtactgaaatcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtactgactaatatgtgtgtatggattaatagtttatgtttatggtactgaaatcaggg 379

                                                                       
Query: 181 gcaggggcatgagccaaagaaagggagctaaaatatttgtggtagtatcatccaggtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 gcaggggcatgagccaaagaaagggagctaaaatatttgtggtagcatcatccaggtctg 439

                                                                       
Query: 241 tcagcaagttgttgtgttgttcattttgtataaaaacaagctagtgcttcttactccagt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 tcagcaagttgttgtgttgttcattttgtataaaaacaagctagtgcttcttactccaat 499

                                                                       
Query: 301 atatatactcctccttaacttaaaatagaggacttagacctgcgtcagagatggctatgt 360
           ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 500 atatatattcctccttaacttaaaatagaggactttgacctgcatcagagatggctatgt 559

                                                                       
Query: 361 taacatctgcatattcattgtcatcagagttattgtaaacatag-tcactcatggaaaca 419
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 taacatctgcatattcattgtcatcagagttattgtaaacataggtcactcatggaaaca 619

                                                                       
Query: 420 attaatactcttccattgtagtagataaaaacaagactagaagtcagtggagacaattta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attaatactcttccattgtagtagataaaaacaagactagaagtcagtggagacaattta 679

                                                                       
Query: 480 ttttattttttatgtctgtgaaaccattccaatttttcttatggatattcctgattgtcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttattttttatgtctgtgaaaccattccaatttttcttatggatattcctgattgtcc 739

                                                                      
Query: 540 ttacatatatttacattgcttctttttatacatgttagaacaggttgcttattttgacc 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttacatatatttacattgcttctttttatacatgttagaacaggttgcttattttgacc 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)