BAC Information

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BAC

Clone NameMSMg01-380B02
Chromosome2 (Build37)
Map Location 109,309,311 - 109,309,905
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380B02.T7 (MSMg01no380_b02.b1)MSMg01-380B02.TJ (MSMg01no380_b02.g1)
ACCAG484531AG484532
length757750
length of high quality
(start - end)
625 (37 - 661)502 (68 - 569)
definitionCHROMAT_FILE: MSMg01no380_b02.b1 PHD_FILE: MSMg01no380_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:01 2005CHROMAT_FILE: MSMg01no380_b02.g1 PHD_FILE: MSMg01no380_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAG
TGTTGTCTAAGATAAGAGAAATCTGTCCCATAGGAACCTGTGGTGTGGAC
ATACGCTGTTGCTATGGTTTTTGAAGCTGTGACTTAAGTGTTTTTGACTC
TACACCTCACCTTCTTCTAGGAATATATAATCAGAAAATAATTACATGTG
TCTAAAAGTATTGATCCTATCATGAATACATTATGAAAACTTGACTATCC
CAACTTTCAGTATTGTCTTGCAATGCTCATATAATGGAAGTCTATTGATT
AAGATGCAAAAGTACTTACTAGTTGCAGAAGGAAAGATAGTAACAGAATA
AATTGAGATTTTATTAATTAACTCATAGTTATATAGCTAAAAAACAATGG
AAGGATTCATACCATATTGTTAAGCAGATTGTATTTATATATTTATGCAT
ATATATATATATATAATAATAACAGTCAATGAAGAGGAGGCTACAAATTT
TCCAGGGAGTATAGGAGGGGCTGGAAGAAGGAAGTAGAAATGATGTAATT
GTGTTTGATTTAAAAAAATATTTTTTAAAGAAAAAACATGGTTCATATAT
ATATTATGGAATTTTATACAGCTATTTAAAAAGTTGAAATGATGACATTG
GCAGGAAAATGTATGCAACTGGAAATCGTTATTATCATATGAAATAAGCC
AGACTCAAACTTTCTCCCTCATCTCTCTCTCCCTCTGTGTGTGTATGGGG
AATGTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATACTCAGAATCTACATGAGAGAAAAGTCAAC
TCCTGCAGTTTGTCCTTACTTGAGTGGAGTTCTTTGTGTAGGAGTGAGCC
TGTATTCATTCTGCAGGTGATGTTTAGGGAGTCATGTTGGCTAGGCTTTG
TGGTTTTAGCCTCTCATATTCCTAGGAGACAGTCTACTGCACACTCCCTG
ATTCTTGGGCCCTAATAATTTTCCCACCATTTCTTCCTCTGATTGCTGGG
CCTTCAGTGCGTTAGTTCTATAGATGTAGCCATTGGGACTGTCTCCATTA
CTCTACTTTTAGATTGCCTGTAATGTTTTATAATGGTAGTCATCTGTGCA
AAGAGATTGCTGTGTGTATAAGATATTTATAATGTATTAGGGGTTATTCT
CGGTTAATAAAATGATTGTAGGTTCTCCTCCAAGATCCCTGGGTAGTTGG
TTAGTTTTTCAATATCAGGCATGATCTCTCTCTTGTTAGTCAGGCTATTG
CATAGTATCTTATCTGTACACATCCTAGGACCAACTAGTTAAGCGTTTTA
TTCAGAGCTTGTGCCTCAGTTACTTAATCCCTATATTTGAAAATATTAAA
TCGAACAGACCAAATACCATCTTAACATTTTTCATTAGCCTTTTTTTTAG
TGAAAATGGATCTCAAAATCTTTACCTAGGAACTTTATCTTCTTTAAATC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_b02.b1 MSMg01no380_b02.b1 CHROMAT_FILE:
MSMg01no380_b02.b1 PHD_FILE: MSMg01no380_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:01 2005
         (625 letters)



>mm_chr2_109309311_109310335
          Length = 1025

 Score = 1054 bits (545), Expect = 0.0
 Identities = 584/601 (97%), Gaps = 8/601 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctagtgttgtctaagataagagaaatctgtcccataggaacctgtggtgtgga 63
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ggaatttctactgttgtctaagataagagaaatctgtcccataggaacctgtggtgtgga 536

                                                                       
Query: 64  catacgctgttgctatggtttttgaagctgtgacttaagtgtttttgactctacacctca 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 535 catacgctgttgctatggtttttgaagctgtgacttaagtgtttttgactttacacctca 476

                                                                       
Query: 124 ccttcttctaggaatatataatcagaaaataattacatgtgtctaaaagtattgatccta 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccttcttctaggaatatataaccagaaaataattacatgtgtctaaaagtattgatccta 416

                                                                       
Query: 184 tcatgaatacattatgaaaacttgactatcccaactttcagtattgtcttgcaatgctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tcatgaatacattatgaaaacttgactatcccaactttcagtattgtcttgcaatgctca 356

                                                                       
Query: 244 tataatggaagtctattgattaagatgcaaaagtacttactagttgcagaaggaaagata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tataatggaagtctattgattaagatgcaaaagtacttactagttgcagaaggaaagata 296

                                                                       
Query: 304 gtaacagaataaattgagattttattaattaactcatagttatatagctaaaaaacaatg 363
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 295 gtaacagaataaattgagattttattaattaattcatagttatatagctaaaaaacaatg 236

                                                                       
Query: 364 gaaggattcataccatattgttaagcagattgtatttatatatttatgcatatatatata 423
           ||||||||  |||||||||||||||||||||||||||||||||||||||      |||||
Sbjct: 235 gaaggatttgtaccatattgttaagcagattgtatttatatatttatgc------atata 182

                                                                       
Query: 424 tatataataataacagtcaatgaagaggaggctacaaattttccagggagtataggaggg 483
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgtaataataacagtcaatgaagaggaggctacaaattttccagggagtataggaggg 122

                                                                       
Query: 484 gctggaagaaggaagtagaaatgatgtaattgtgtttgatttaaaaaa--atatttttta 541
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 121 gctggaagaaggaagtagaaatgatgtaattgtgtttgatttaaaaaaatatatttttta 62

                                                                       
Query: 542 aagaaaaaacatggttcatatatatattatggaattttatacagctatttaaaaagttga 601
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagaaaaatcatggttcatatatatattatggaattttatacagctatttaaaaagttga 2

            
Query: 602 a 602
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)