Query= MSMg01no380_c10.b1 MSMg01no380_c10.b1 CHROMAT_FILE:
MSMg01no380_c10.b1 PHD_FILE: MSMg01no380_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:08 2005
(482 letters)
>mm_chr2_6528752_6529628
Length = 877
Score = 853 bits (441), Expect = 0.0
Identities = 471/483 (97%), Gaps = 7/483 (1%)
Strand = Plus / Minus
Query: 1 gtgatgcattttgaaatacaaagtcatatgtacagtgtatgcatgctgtcaatgtagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtgatgcattttgaaatacaaagtcatatgtacagtgtatgcatgctgtcaatgtagaga 618
Query: 61 gcatcagccaaggaggagatataaagtagcccacttttaacttagaaaatgcaagttacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 617 gcatcagccaaggaggagatataaagtagcccacttttaacttagaaaatggaagttacc 558
Query: 121 ttttgctactttcaaaccttttggg-aaaaaaaaatgtatacaacgttctccctacttcc 179
||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct: 557 ttttgctactttcaaaccttttgggaaaaaaaaaatgt----aacgttctccctagttcc 502
Query: 180 ctttaaaaaaaaaaaaaaaagctaatgaataaattgttcttctttggtcagattagcaat 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttt-taaaaaaaaaaaaaagctaatgaataaattgttcttctttggtcagattagcaat 443
Query: 240 tcaggactgtgttataaaaaacaaactaagctaaaaccaaagagagaagctgtttacttt 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcaggactgtg-aataaaaaacaaactaagctaaaaccaaagagagaagctgtttacttt 384
Query: 300 tatgtactactgagaacagtgtggtcttgtggcagttctcgtacactgtgttggtttaac 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 383 tatgtactactgagaacagtgtggtcttgtggcagttctcgtagactgtgttggtttaac 324
Query: 360 aagcgtccaacccttttgtcttgttgttttttgtctttcctgctccctgtccccttgttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagcgtccaacccttttgtcttgttgttttttgtctttcctgctccctgtccccttgttt 264
Query: 420 cccacaggctgtgcgtttgtcacattttctacaagggcaatggcacagaatgcaatcaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cccacaggctgtgcgtttgtcacattttctacaagggcaatggcacagaatgcaatcaaa 204
Query: 480 gcc 482
|||
Sbjct: 203 gcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 877
Length adjustment: 10
Effective length of query: 472
Effective length of database: 867
Effective search space: 409224
Effective search space used: 409224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_c10.g1 MSMg01no380_c10.g1 CHROMAT_FILE:
MSMg01no380_c10.g1 PHD_FILE: MSMg01no380_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:08 2005
(328 letters)
>mm_chr2_6341306_6342033
Length = 728
Score = 565 bits (292), Expect = e-165
Identities = 319/328 (97%)
Strand = Plus / Plus
Query: 1 ctcacatggtgtcctgcacactctggaagctctctgccctaattctcactgttgattcca 60
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcacacggtgtcctgcagactctggaagctctctgccctaattctcactgttgattcca 260
Query: 61 tgaagagaaagggaagaaggagagggctttgaaaggaaggaaggaagggtttttaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagagaaagggaagaaggagagggctttgaaaggaaggaaggaagggtttttaaatat 320
Query: 121 gtttatttatattgcttagacctttcttagccctattcctgccaatatataaatgataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttatttatattgcttagacctttcttagccctattcctgccaatatataaatgataaa 380
Query: 181 agggttttttgtgtttgtttgtttggttggttggtttggtttttcgagactcgggaggca 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 agggttttttgtgtttgtttgtttgtttggttggtttggtttttcgagactcgggaggca 440
Query: 241 gaggtttgcggatttctgagttcgaggccagcctggtctacagagtgagttccaggacag 300
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggcaggcggatttctgagtttgaggccagcctggtctacagagtgagttccaggacag 500
Query: 301 ccagggatacactgagaaaccatgtctc 328
|||||| ||||| |||||||||||||||
Sbjct: 501 ccagggctacacagagaaaccatgtctc 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
