AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATACTTTCTCCTTTTGCCAGGAAACTATTTGTTTTATCTAGGTTTTAA
AATATGCTGACATGAAATCACATATATTTACACTTAGTATGTATTTCTTC
CTTTTTGGTTTTGTAATTAAGTTTCCAAGGTAACTTGGAAGTATTTTTTT
TTCACTTAAAAAGTAAAAGCTTAAAAGAAGACAAGTAAAAGCTTTTTATT
TATTTATTGATGAAGTCTAATGTATATTTTCTCAATATATTTCCTCCACT
TGTCTTTAAAACATTCTGTTTTCCAATTTATACGTTTTCTATGCTAAGGT
ATTTTGTGATTTCTTGTATGGTGTGTTCATTTGAAAATACTTCTAATGTA
GAAAATATTCCATACACAGAAGATATGAACCTGTGCATAAACTGCCCACT
CAAACATCTCCCCTAGTGTTTCTGGTGGATATTTTGTTTTCTAGTCTCCA
AATTTTCTTTCTTTTCTTCTTCTTGTGAGATAAAATTTTTCTGTTTTTGT
TTTTTAGACAAGTTCTCTCTGTGTTGTGGCTGTCCTGGTACTTGCAATCT
ATATCAAGCTGGCCTCGAACTCATAGAAATCTACCTGCTTCTGCCTTTTC
AGTGCTGGGATTAAAGATGTGCACCACCATGCTTTGGCTTATTTCCTTCC
CTCCCTCCCTTTTTTCCCATCCTAT

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGA
GATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCT
GGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTG
GCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTC
TGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGA
TTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAG
TTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAA
GGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGC
CCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGG
CCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCT
TGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCTGCCCCAGA
ATCTCTGCGACTCTCTCGCCCGTCCCAGATACGGCTGGCACTCTGTATTC
CCCATGGTCACCCGTGCAGCCTGCCCTCCCGCGGAGTCCCGGGAGCCCAG
ATAGCTTCCCGCCCGGGCCTGTGGCCCCAATTTTTTCCGGCCCATGTAGA
CCCC

Query= MSMg01no380_c19.b1 MSMg01no380_c19.b1 CHROMAT_FILE:
MSMg01no380_c19.b1 PHD_FILE: MSMg01no380_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:10 2005
         (562 letters)



>mm_chr2_11230711_11231673
          Length = 963

 Score = 1050 bits (543), Expect = 0.0
 Identities = 555/559 (99%), Gaps = 1/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatactttctccttttgccaggaaactatttgttttatctaggttttaaaatatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattcatactttctccttttgccaggaaactatttgttttatctaggttttaaaatatg 644

                                                                       
Query: 65  ctgacatgaaatcacatatatttacacttagtatgtatttcttcctttttggttttgtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctgacatgaaatcacatatatttacacttagtatgtatttcttcctttttggttttgtaa 584

                                                                       
Query: 125 ttaagtttccaaggtaacttggaagta-tttttttttcacttaaaaagtaaaagcttaaa 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 583 ttaagtttccaaggtaacttggaagtattttttttttcacttaaaaagtaaaagcttaaa 524

                                                                       
Query: 184 agaagacaagtaaaagctttttatttatttattgatgaagtctaatgtatattttctcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 523 agaagacaagtaaaagctttttatttatttattgatgaagtctaatgtatactttctcaa 464

                                                                       
Query: 244 tatatttcctccacttgtctttaaaacattctgttttccaatttatacgttttctatgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tatatttcctccacttgtctttaaaacattctgttttccaatttatacgttttctatgct 404

                                                                       
Query: 304 aaggtattttgtgatttcttgtatggtgtgttcatttgaaaatacttctaatgtagaaaa 363
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 403 aaggtattttgtgatttcttgtatggtgtgttcatttaaaaatacttctaatgtagaaaa 344

                                                                       
Query: 364 tattccatacacagaagatatgaacctgtgcataaactgcccactcaaacatctccccta 423
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 343 tattccatacacagaagatatgaacttgtgcataaactgcccactcaaacatctccccta 284

                                                                       
Query: 424 gtgtttctggtggatattttgttttctagtctccaaattttctttcttttcttcttcttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgtttctggtggatattttgttttctagtctccaaattttctttcttttcttcttcttg 224

                                                                       
Query: 484 tgagataaaatttttctgtttttgttttttagacaagttctctctgtgttgtggctgtcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tgagataaaatttttctgtttttgttttttagacaagttctctctgtgttgtggctgtcc 164

                              
Query: 544 tggtacttgcaatctatat 562
           |||||||||||||||||||
Sbjct: 163 tggtacttgcaatctatat 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space:   526056
Effective search space used:   526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)