BAC Information

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BAC

Clone NameMSMg01-380K05
Chromosome2 (Build37)
Map Location 83,691,221 - 83,691,585
singlet/doubletsinglet
Overlap geneD430039N05Rik
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1
Downstream geneZswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380K05.T7 (MSMg01no380_k05.b1)MSMg01-380K05.TJ (MSMg01no380_k05.g1)
ACCAG484966AG484967
length776784
length of high quality
(start - end)
494 (56 - 549)393 (64 - 456)
definitionCHROMAT_FILE: MSMg01no380_k05.b1 PHD_FILE: MSMg01no380_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:46 2005CHROMAT_FILE: MSMg01no380_k05.g1 PHD_FILE: MSMg01no380_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATATCCAGAGGATCCGCGGAATTCTCACCTGT
TCCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAA
TCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCA
GTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGG
ATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTG
TACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATA
GTACTACCGGTATTGATCCAGCAATACCTCTACTGGGCATTTATCCAGAA
GATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGCATTTATGAAATTCTTAGCCAAATGGATGGACCT
GGAGAGCATCATCCTGAGTGAGGTAACACATTTCACAAGGAACTCACACT
ATATGTACTCACTGATAAGTGGATATTATCCCCCAAACCTAGGATTCTCA
AGATATAATGTACCATTTGTTTAACCCATGAACTTCTCTAGAATGGAGAC
TGTAATTGTGGACATTAACCCCCCTCCTTATAAACGGGAACCAATACACC
CACGCCATGTTTTTCCCCACCCCCCN
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGAGATTTAATAGTAGTGTGACATTTTTTTGATCT
CTAGAGAGGATCAGAACTATTTTGCTTTTCTGTCTGCTGAGCTGCACCTT
CCCAAGGACAGAGTGGTTGTTCGTTAGCTCTGTTTATATTTAAAATGATC
CCTAAACACTTTAAGGTGTGGATTAACAAAGCTGGAGTAAGCGTGCCCGA
TGGTGACTGGTTAGCAGTGGTGTGGAGTAGTTAACAGTAAGTAGGAGTTT
TCCTTCTACCTTTTTTGATTTTTTTTTTCACAAAATGATGTTTAGTAAAA
ATGAGTTTATTTATGCAAATAAATGTCAGTCCTTAAGGAGATATTTACTA
AAGTGCTGCACTGGGTGTGGTGTGTCTTTCCAACTGCATAAAAAAAATGA
TTACTAATAATCATAATGGCCAAACATATTTTCGCTAACTTCATTTTGTT
AACGTGAAGCACTTGCTATTCTCCCAGGGGTCCCCGAGTTGCATTTTTCG
CTGACAGACCTGTGGCCACGTATCTGAGGTATGTCTTATTGCATCTCTCT
TGGCTCCTGATCCCCCTCTTACGGTAAAACTTTCACCCTCTTGGCCATAA
CAGTTTTTGTTCCCTTCCTTCCAATCGCCTTCCCCCTCTCTTATCAACTT
CTCCGCTTACTTCGCCTCCCTCTCGCTTCCATCCCCCCGGCCCACTCCAT
GCCCTTTTTCTTCCTCCCCCATTCTTCCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_k05.g1 MSMg01no380_k05.g1 CHROMAT_FILE:
MSMg01no380_k05.g1 PHD_FILE: MSMg01no380_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:46 2005
         (393 letters)



>mm_chr2_83690996_83691785
          Length = 790

 Score =  571 bits (295), Expect = e-167
 Identities = 350/373 (93%), Gaps = 13/373 (3%)
 Strand = Plus / Plus

                                                                       
Query: 26  tttttttgatctctagagaggatcagaactattttgcttttctgtctgctgagctgcacc 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tttttttgatctctagagaggatcagaactattttgcttttctgtctgctgagctgcacc 285

                                                                       
Query: 86  ttcccaaggacagagtggttgttcgttagctctgtttatatttaaaatgatccctaaaca 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttcccaaggacagagtggttgttcgttagctctgtttatatttaaaatgatccctaaaca 345

                                                                       
Query: 146 ctttaaggtgtggattaacaaagctggagtaagc-gtgcccgatggtgactggttagcag 204
           |||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 346 ctttaaggtgtggattaacaaagctggaataagcag-gcccgatggtgactggttagcag 404

                                                                       
Query: 205 tggtgtggagtagttaacagtaagtaggagttttccttctacct----tttttgattttt 260
           ||||||||||||||||||||||||||||||||||||||||||||    |    |||||||
Sbjct: 405 tggtgtggagtagttaacagtaagtaggagttttccttctacctgacat----gattttt 460

                                                                       
Query: 261 tttttcacaaaatgatgtttagtaaaaatgagtttatttatgcaaataaatgtcagtcct 320
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttt--cacaaaatgatgtttagtaaaaatgagtttatttatgcaaataaatgtcagtcct 518

                                                                       
Query: 321 taaggagatatttactaaagtgctgcactgggtgtggtgtgtctttccaactgcataaaa 380
           ||||||||||||||| |||| |||| | ||| | ||||||| ||||||||||||| ||||
Sbjct: 519 taaggagatatttacaaaagcgctgtaatggatatggtgtggctttccaactgcagaaaa 578

                        
Query: 381 aaaatgattacta 393
           ||| | |||||||
Sbjct: 579 aaatt-attacta 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 790
Length adjustment: 9
Effective length of query: 384
Effective length of database: 781
Effective search space:   299904
Effective search space used:   299904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)