BAC Information

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BAC

Clone NameMSMg01-380K11
Chromosome2 (Build37)
Map Location 111,525,043 - 111,525,619
singlet/doubletsinglet
Overlap genenone
Upstream geneMuc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299
Downstream geneOlfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380K11.T7 (MSMg01no380_k11.b1)MSMg01-380K11.TJ (MSMg01no380_k11.g1)
ACCAG484978AG484979
length756759
length of high quality
(start - end)		651 (57 - 707)574 (67 - 640)
definitionCHROMAT_FILE: MSMg01no380_k11.b1 PHD_FILE: MSMg01no380_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:47 2005CHROMAT_FILE: MSMg01no380_k11.g1 PHD_FILE: MSMg01no380_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGC
CTATCCCTAAACATGATAAAATCAATCTACAGCAAACCAGTAGCCAACAT
CAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTA
TTAGCCAGAGCAATTCAACAACAAAAGGAGATCAAGGGGATACAAATTGG
AAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATA
TAAGTGACCCTATTTAATTCTACCAGAGAACTCCTAAACCTGATAAACAG
CTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCT
TTCTCTATACAAAGAATAAACATGCTGAGAAAGAAATTAGGGAAACAACA
CCCTTCTCAATAGTCACAAATAATATAAAATATTTTGGCGTGACTCTAAC
TAGGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAG
AAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATT
GGCAGGGTCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG
ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTTG
AAGGAGCAATTTTGCAATTCATCTGGAATAACAACAACCTAGGATAGCAA
AAAGCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTCTCTCAAGTTTCCAGCCATTTTTTTTCACA
CAAACAAAATATCCTAGAATTTCTATTGTCTCCATTTGTGTTTCTAGAAA
CTTCTAATTTCCTGTAGATTATTCACTCCATTGACAGGTAATAGTATTTA
AAAATCTGGTGATTATTATTATTGTAACAATAAAAACTACTACTACTATC
ACATTATTATTATTATGATTATTATTTTGTCATAATGTCTCCTCTTCCAT
TTGAATTGCATATACTTGAGTTCCTTTACCTTTTGTAACTAGAGATGATT
GCTTGTATCTTTTAAAAGTCAACTCCAACTTTTCATTCCAATCCACATAT
GCATATTGCAAAATCAGACATTTATATGACTGATAGGAAAGGGAAATTGT
AGGATCATTGTGGAGAACAATATTTAGGGTTCATAACAATTAAACATGGA
GATAATATGTAAGCCAGCATACTGCTTTCTACTATATATCTGCAGCTTTT
GAAATTTATGTGTTGAAGATATATCTGCACAGTCCTATTTTTATAGTATT
ACTTATCACAGTCACACTCAGTTTGATTTTCTATGGATAAGTGGATAAAG
CTGGGAGTGGTTGATAGCACTGAGTGAACTGTTCTCCCAATGCAGCAGGG
CAGATGCCGATAGGTACTCCCAGATGTGTACAATGTTTCCATTGGAATCT
TTAAATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_k11.g1 MSMg01no380_k11.g1 CHROMAT_FILE:
MSMg01no380_k11.g1 PHD_FILE: MSMg01no380_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:47 2005
         (574 letters)



>mm_chr2_111524852_111525825
          Length = 974

 Score = 1077 bits (557), Expect = 0.0
 Identities = 571/577 (98%), Gaps = 3/577 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctctcaagtttccagccattttttttcacacaaacaaaatatcctagaatttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttctctctcaagtttccagccattttttttcacacaaacaaaatatcctagaatttctat 709

                                                                       
Query: 61  tgtctccatttgtgtttctagaaacttctaatttcctgtagattattcactccattgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtctccatttgtgtttctagaaacttctaatttcctgtagattattcactccattgaca 649

                                                                       
Query: 121 ggtaatagtatttaaaaatctggtgattattattattgtaacaataaaaactactactac 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 648 ggtaatagtatttaaaaatctggtgattattattagtgtaacaataaaaactactactac 589

                                                                       
Query: 181 tatcac---attattattattatgattattattttgtcataatgtctcctcttccatttg 237
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tatcacattattattattattatgattattattttgtcataatgtctcctcttccatttg 529

                                                                       
Query: 238 aattgcatatacttgagttcctttaccttttgtaactagagatgattgcttgtatctttt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aattgcatatacttgagttcctttaccttttgtaactagagatgattgcttgtatctttt 469

                                                                       
Query: 298 aaaagtcaactccaacttttcattccaatccacatatgcatattgcaaaatcagacattt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aaaagtcaactccaacttttcattccaatccacatatgcatattgcaaaatcagacattt 409

                                                                       
Query: 358 atatgactgataggaaagggaaattgtaggatcattgtggagaacaatatttagggttca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atatgactgataggaaagggaaattgtaggatcattgtggagaacaatatttagggttca 349

                                                                       
Query: 418 taacaattaaacatggagataatatgtaagccagcatactgctttctactatatatctgc 477
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 348 taacaattaaacatggagataatatgtaagccagcatgctgctttctactatatatctgc 289

                                                                       
Query: 478 agcttttgaaatttatgtgttgaagatatatctgcacagtcctatttttatagtattact 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agcttttgaaatttatgtgttgaagatatatctgcacagtcctatttttatagtattact 229

                                                
Query: 538 tatcacagtcacactcagtttgattttctatggataa 574
           ||||||||||||||||||||| |||||||||||||||
Sbjct: 228 tatcacagtcacactcagtttaattttctatggataa 192


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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