BAC Information

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BAC

Clone NameMSMg01-381B14
Chromosome2 (Build37)
Map Location 163,448,714 - 163,449,190
singlet/doubletsinglet
Overlap geneSerinc3
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik
Downstream genePkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381B14.T7 (MSMg01no381_b14.b1)MSMg01-381B14.TJ (MSMg01no381_b14.g1)
ACCAG485319AG485320
length757784
length of high quality
(start - end)		479 (62 - 540)479 (69 - 547)
definitionCHROMAT_FILE: MSMg01no381_b14.b1 PHD_FILE: MSMg01no381_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:23 2005CHROMAT_FILE: MSMg01no381_b14.g1 PHD_FILE: MSMg01no381_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
TAGTCCAAACTCAAATGGCGGAGAAGTATGAAAAAAGAAAAGAAAAGAAG
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG
AGAAGAGAAGAGAAAATGTTCAATGCCCTTAGCCAACAGGGAAATGAAAT
CAAAACTAGTTGAGATTCTATCTTATACCTGATAGAATGGCAAAGATCAA
TGAACAAAAGATAACTCATGCTGGTGCGGATGTGGAGTAGGAACACCCTT
CCATTGCTGGTGGGAATGCAGACTTGTACAACCCCTATGGAAATCAGTTG
GCAGTTCCTCGGGAAGATGGGAATTGATCTACCTCAACATCCAGCTGGAC
CATTCTTGGGTGTGTACCCAAAGGGCACTCCATCCTACCACAGAGACCTT
GCTCAACCCTGATCATTGCTGTGTTATTCATAACAGCCAGAAACTGGAAA
CAAGCTAGACNAATGAATAAAGAAAATGAAGATGGGAATGCGTGCGTAAA
GGGCAGCGGNTCCNTTCTCCCCCTCCTTTTCTTTCTCCTTTTTCCTTCTT
CTCCCCCTCTTCCCTTCCTTTTCCCCCTCTTTTTCTTCCTTTTTTCCCCC
TCCTCCCCTTTTCTTCCTCCTCTCGTTTTCCTNCCTCCCTCCCCTTCCTT
TCCCCCCCCCTTTTCCCCCCCTCTTTTTCCCCCTTGTGTTTCCTTCTTCC
CCTTTCT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAGACCATGCCACTCATCTGAATCAGGGCCC
TCAGTCTACAGATGAGTCTGTGATGAAATATCAAGTGGACTCATCTGGCA
TGAGATAACTCAAAACTATGTCCAGTTCTGAAGTATACCCACAGGCTTAC
TCAAAACGCCGGTATTTCACACCTGTGTACAGTTCTGCACGAGACTGAAA
TGAACAACTGTTTCATGTTAACAGCCAGACTTAACTTAGAGTGCAGCCAA
GCAACAGTGAAATTGCTCTGTTTTTAAGAGAACTTAGTATTTCAAATTAA
TCTAAGGTATCATGGTGAAAAAAAAAAAAACCCGTTATTGAACTCTATTA
CATTATTTGGTAGTTTAGAACTCCATTTATTTTTAATCATATAAGGCAAA
GAATAGGATCCGCTTTGAAATGTATGGTTCCCCTACTGTTAAAAACAGGT
ATTTGTCTCACACAGTTAAGCTTAAAGGCCACAACTATCTGCTTCACAAA
TCCTTTTGTAGTTTGCTTTGACACATGATCCTAAAAGGACAGTGGTTCCA
ACAACCCACCAAACCCAGTTTCCCTAGCCTCCAGTTCTTACTAGGTGTCT
ATATTACAACTATGTTTTAATTCATAAAAACACTTTTACCCAGCCCCCTT
TAAAAATCTGAAAACTCCTGGACTTTTAAAAAAATTAAACTGGCTTTATC
CCAAAAGGAATGGGGCTTTTTGTGAAAAACCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_b14.g1 MSMg01no381_b14.g1 CHROMAT_FILE:
MSMg01no381_b14.g1 PHD_FILE: MSMg01no381_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:23 2005
         (479 letters)



>mm_chr2_163448514_163449390
          Length = 877

 Score =  845 bits (437), Expect = 0.0
 Identities = 469/481 (97%), Gaps = 6/481 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaccatgccactcatctgaatcagggccctcagtctacagatgagtctgtgatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaccatgccactcatctgaatcagggccctcagtctacagatgagtctgtgatgaaa 260

                                                                       
Query: 61  tatcaagtggactcatctggcatgagataactcaaaactatgtccagttctgaagtatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcaagtggactcatctggcatgagataactcaaaactatgtccagttctgaagtatac 320

                                                                       
Query: 121 ccacaggcttactcaaaacgccggtatttcacacctgtgtacagttctgcacgagactga 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ccacaggcttactcaaaacgccggtatttcacgcctgtgtacagttctgcacgagactga 380

                                                                       
Query: 181 aatgaacaactgtttcatgttaacagccagacttaacttagagtgcagccaagcaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaacaactgtttcatgttaacagccagacttaacttagagtgcagccaagcaacagt 440

                                                                       
Query: 241 -gaaattgctctgtttttaagagaacttagtatttcaaattaatctaaggtatcatggtg 299
            ||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 441 agaa-ttgctctgtttttaagagaactta---tttcaaattaatctaaggtatcatggtg 496

                                                                       
Query: 300 aaaaaaaaaaaaa-cccgttattgaactctattacattatttggtagtttagaactccat 358
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaaaaaaaaaaaaaccctttattgaactctattacattatttggtagtttagaactccat 556

                                                                       
Query: 359 ttatttttaatcatataaggcaaagaataggatccgctttgaaatgtatggttcccctac 418
           ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 557 ttatttttaatcatataagacaaagaataggatccgctttgaaatttatggttcccctac 616

                                                                       
Query: 419 tgttaaaaacaggtatttgtctcacacagttaagcttaaaggccacaactatctgcttca 478
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 617 tgttaaaaacaggtatttgtctcacacagttaagcttaagggccacaattatctgcttca 676

            
Query: 479 c 479
           |
Sbjct: 677 c 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 877
Length adjustment: 10
Effective length of query: 469
Effective length of database: 867
Effective search space:   406623
Effective search space used:   406623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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