BAC Information

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BAC

Clone NameMSMg01-381F07
Chromosome2 (Build37)
Map Location 99,991,206 - 99,991,723
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381F07.T7 (MSMg01no381_f07.b1)MSMg01-381F07.TJ (MSMg01no381_f07.g1)
ACCAG485497AG485498
length716748
length of high quality
(start - end)
522 (38 - 559)374 (74 - 447)
definitionCHROMAT_FILE: MSMg01no381_f07.b1 PHD_FILE: MSMg01no381_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:42 2005CHROMAT_FILE: MSMg01no381_f07.g1 PHD_FILE: MSMg01no381_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
TTTTTTCTATTTTACTTGGAAAAAAATAATGCATCTTCAATGTAGAAAGA
CATCTGTGAAGATGATACAATGGAATGACATGAAAATACATAGGGTGATG
CCTATGTATTTCTGCATACCCACATCAATGCTCTTATGGAAAGGTAGAAA
GAGAAATTGGTGAAAACTGAAGAATAATTTTATAACATATAATTGAATAT
TTGAAAACTAAAGTTGCTCATGGTTGAACTTGATCCTTCTTTGCTAATGG
AGCTGCCTGTAGATCATGTTAGGAGAATTTAAGATTGTAAGCTTATCACC
AGATCCAGGAGACAGTAAACTTACTTCTGTGGGGCTTTTTTCTCCAAATA
TATTCTGTACTCATATTTCCATAAAAGATAAGTACTGTTTTAAGTAAAGC
TAATTCATTCTAGAATAACTAATTAAGTCATGAACACATACACAAATGTT
ACTACATATGTACCACATACAGATGTGAAGGGATTTGAATGGTAATTTAA
AAATTCTTAATTAAGGGCTGGTGAGATGGAAGAATAGCAACAGACATTTC
TTGTTAAGATTAGAACATGAGCTTACCTGGGCATGGTGGACATGGCTTTG
ATCCCGCCCTAGGGAGGCGAGAAAGGCAGATTTCTGAAATGAAGCCGCCC
GGGCTTAAAAAGAGAT
CAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGCTTATCTCTGTACCCCATTTTTA
ATAGGGTTATTTGGTTTTCTAGAGTCCAACTTCTTGAGTTCTTTTTATAG
TTTGGATATTAGACCTTTATTGAATTTAGGGTTGGTAAAAATCTTTTCCC
AATCTGTAGGTTGCTGTTTTGTCCTATTGACAATGTCCTTTGCCTTACGG
AAAATTTTCAGTTTTATGAAATCTCATTTGTCAATTGTTGATCTTAGATC
CTGAGCCATTGGTGTTCTGTGCAGGAAATTTTCCCCTGTGCCAATGAATT
TAAGGCTCTTTTTTACTGTCTCTTCTATTAGATTCAACAAATCTTGTTTT
ATATGGAGATCCATGATTCATTTGAACTTGAGATTTTTAAAAGAAGATAA
AAATGGTTCAATTTGCATCCTTCACCATGTCAGTTGCCAGTTGAATCAGC
ACCATTTGTTAAAAATACTGTCTTTTTCTACTGGATCGATTTGGCTTCTT
TGTTAAAGATCAAGTGTTCATAGGTATGTAGGTGTATTTCTAGGCCTTTT
GATCTGCGCCATTGGACTATTTGCGGGGGTATGTACCAAAACACGCAGTT
TTTAACCATATTTCTCTGTAATAAACTTTGAGGCTGGGAAGGTGGGTTCT
TCCCAATTCTTCTATTGTGAGAAAAATTTTCTCAACCTGGAATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_f07.b1 MSMg01no381_f07.b1 CHROMAT_FILE:
MSMg01no381_f07.b1 PHD_FILE: MSMg01no381_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:42 2005
         (522 letters)



>mm_chr2_99991002_99991923
          Length = 922

 Score =  986 bits (510), Expect = 0.0
 Identities = 516/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccttttttctattttacttggaaaaaaataatgcatcttcaatgtagaaagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gaattctccttttttctattttacttggaaaaaaataatgcatcttcaatgtagaaagac 663

                                                                       
Query: 65  atctgtgaagatgatacaatggaatgacatgaaaatacatagggtgatgcctatgtattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atctgtgaagatgatacaatggaatgacatgaaaatacatagggtgatgcctatgtattt 603

                                                                       
Query: 125 ctgcatacccacatcaatgctcttatggaaaggtagaaagagaaattggtgaaaactgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctgcatacccacatcaatgctcttatggaaaggtagaaagagaaattggtgaaaactgaa 543

                                                                       
Query: 185 gaataattttataacatataattgaatatttgaaaactaaagttgctcatggttgaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gaataattttataacatataattgaatatttgaaaactaaagttgctcatggttgaactt 483

                                                                       
Query: 245 gatccttctttgctaatggagctgcctgtagatcatgttaggagaatttaagattgtaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gatccttctttgctaatggagctgcctgtagatcatgttaggagaatttaagattgtaag 423

                                                                       
Query: 305 cttatcaccagatccaggagacagtaaacttacttctgtggggcttttttctccaaatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cttatcaccagatccaggagacagtaaacttacttctgtggggcttttttctccaaatat 363

                                                                       
Query: 365 attctgtactcatatttccataaaagataagtactgttttaagtaaagctaattcattct 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 attctatactcatatttccataaaagataagtactgttttaagtaaagctaattcattct 303

                                                                       
Query: 425 agaataactaattaagtcatgaacacatacacaaatgttactacatatgtaccacataca 484
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 302 agaataactaattaagtcatgaacacatatacaaatgttactacatatgtaccacataca 243

                                                 
Query: 485 gatgtgaagggatttgaatggtaatttaaaaattctta 522
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gatgtgaagggatttgaatggtaatttaaaaattctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)