Query= MSMg01no381_j03.b1 MSMg01no381_j03.b1 CHROMAT_FILE:
MSMg01no381_j03.b1 PHD_FILE: MSMg01no381_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:01 2005
(544 letters)
>mm_chr2_64189204_64190146
Length = 943
Score = 978 bits (506), Expect = 0.0
Identities = 518/522 (99%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 23 tgaaaaaaaatcaatttcaatcctctgaggatgatatactgcctctgaaggtcaccaaat 82
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 223 tgaaaaaaaatcaatttcaatcctctgaggatgatatactgcctctgagggtcaccaaat 282
Query: 83 gctatcagttctccgagacccttgagacttgaaaggagatttccaaaaaattaccacacc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gctatcagttctccgagacccttgagacttgaaaggagatttccaaaaaattaccacacc 342
Query: 143 tcaaattttagcccttgggttgaaagcatacactggattttatttatttttttctcctca 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcaaattttagcccttgggttgaaagcatacactggattttatttatttttttctcctca 402
Query: 203 agtttcccagaagtttctcatcagtcaataaaaaggctaacttctgtacacatacgaaaa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agtttcccagaagtttctcatcagtcaataaaaaggctaacttctgtacacatacgaaaa 462
Query: 263 aataatttacatcatttgggggacaacaattttgcattagccatatgagctgaccttctg 322
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 463 aataatttacatcatttggggaacaacaattttgcattagc-atatgagctgaccttctg 521
Query: 323 gttagtaacaggatggaataaagtatttgagaaatattttaaataaacagggaaggaatt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gttagtaacaggatggaataaagtatttgagaaatattttaaataaacagggaaggaatt 581
Query: 383 catacagtaagaaggataaatcacgtgtgtgtttcccatagcgtcctctagtcctttgct 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 catacagtaagaaggataaatcacgtgtgtgtttcccatagcgtcctctagtcctttgct 641
Query: 443 tgtatgtgatatgtgacccctctaaagtctcttaatgactgcgaatctcaattttcttgg 502
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 642 tgtatgtgatatgtgacccctctaaagtctcttaatgactgtgaatctcaattttcttgg 701
Query: 503 ttatagataaagcatccagtatatcaataaccataaaaacag 544
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttatagataaagcatccagtatatcaataaccataaaaacag 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_j03.g1 MSMg01no381_j03.g1 CHROMAT_FILE:
MSMg01no381_j03.g1 PHD_FILE: MSMg01no381_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:02 2005
(515 letters)
>mm_chr2_64370545_64371459
Length = 915
Score = 980 bits (507), Expect = 0.0
Identities = 513/515 (99%)
Strand = Plus / Minus
Query: 1 ctcaaaagcgatttccttggtaagttttagctgctaggtcttaggcattctccaggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ctcaaaagcgatttccttggtaagttttagctgctaggtcttaggcattctccaggatcc 656
Query: 61 agtagtccttgagacgtttataaatatagaaataacagagaggcgaagaaattcctttta 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 655 agtagtccttgagacgtttataaatatagaaataacagagaggtgaagaaattcctttta 596
Query: 121 ataactttatcctatgggagtacttttaatttaaatgtaattgcattaatttaagaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ataactttatcctatgggagtacttttaatttaaatgtaattgcattaatttaagaaacc 536
Query: 181 ataaatgggatatatctattgaaataaatctacattaaaaacacttgaataaactataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ataaatgggatatatctattgaaataaatctacattaaaaacacttgaataaactataag 476
Query: 241 tacatagcaaagtttaaagagaaaagccggctgaatgggggttctggcaacataaaattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tacatagcaaagtttaaagagaaaagccggctgaatgggggttctggcaacataaaattc 416
Query: 301 ccttgttccaacagagcgggaatctaggcattgtatcacaatacacagatggcattttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ccttgttccaacagagcgggaatctaggcattgtatcacaatacacagatggcattttgg 356
Query: 361 aaaggacatattgcaaacactgaaactacctttctatagcacacacagcctatatgcctc 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 355 aaaggacatattgcaaacactgaaactgcctttctatagcacacacagcctatatgcctc 296
Query: 421 ctgttcattaacaaaagttaatgcccaagaagggccaccaagctagctccattcctgact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctgttcattaacaaaagttaatgcccaagaagggccaccaagctagctccattcctgact 236
Query: 481 aagtcactatgtggaatctatcctatctttacttc 515
|||||||||||||||||||||||||||||||||||
Sbjct: 235 aagtcactatgtggaatctatcctatctttacttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
