Query= MSMg01no381_l24.b1 MSMg01no381_l24.b1 CHROMAT_FILE:
MSMg01no381_l24.b1 PHD_FILE: MSMg01no381_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:16 2005
(514 letters)
>mm_chr2_116828360_116829273
Length = 914
Score = 932 bits (482), Expect = 0.0
Identities = 503/510 (98%)
Strand = Plus / Plus
Query: 5 gaattcatttagtgtgccattacaaggtaagtaatttccactcccttgaacttgaaagtc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcatttagtgggccattacaaggtaagtaatttccactcccttgaacttgaaaatc 264
Query: 65 tgccagatgagtattttcagggtccttccattacctgcgcatggccctaagcttgccaga 124
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 265 tgccagatgagtattttcagggtccttccattacctgtgcatggccctaagcttgccaaa 324
Query: 125 attctgcttgtgagcatgcttgactccaaccctgtcagagtttaaaatcaggacaactct 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attctgcttatgagcatgcttgactccaaccctgtcagagtttaaaatcaggacaactct 384
Query: 185 gacagtttgtccaggaagcagatgtactgttgttgtacaaagtttacatatcttagtaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacagtttgtccaggaagcagatgtactgttgttgtacaaagtttacatatcttagtaga 444
Query: 245 tttaaactgagctataaacagagtcgactgccatttcttgactatttatataaattaaag 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaaactgagctataaacagagttgactgccatttcttgactatttatataaattaaag 504
Query: 305 gatggcttaacttaatttcttccacttgtaccctctggcaataaagatcactaaagagtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatggcttaacttaatttcttccacttgtaccctctggcaataaagatcactaaagagtt 564
Query: 365 cagttctctttctcaaaggactgcttgccatcttctgatatttagctgtatctcctgcaa 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagttctctttcccaaaggactgcttgccatcttctgatatttagctgtatctcctgcaa 624
Query: 425 tagtttatattggaacctacactgatctaatccataaaaccttatttctgatgtaactcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagtttatattggaacctacactgatctaatccataaaaccttatttctgatgtaactcc 684
Query: 485 cccatcctcagattcaggatcgatcttaga 514
||||||||||||||||||||||||||||||
Sbjct: 685 cccatcctcagattcaggatcgatcttaga 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_l24.g1 MSMg01no381_l24.g1 CHROMAT_FILE:
MSMg01no381_l24.g1 PHD_FILE: MSMg01no381_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:16 2005
(426 letters)
>mm_chr2_116900730_116901557
Length = 828
Score = 785 bits (406), Expect = 0.0
Identities = 422/428 (98%), Gaps = 2/428 (0%)
Strand = Plus / Minus
Query: 1 tttagacctcctacttgaaaatggggattcagtttcaagatgtaattccctcccacatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttagacctcctacttgaaaatggggattcagtttcaagatgtaattccctcccacatcc 569
Query: 61 ccctcccaccaccaccacacatacacacacggagcaccttagcaaatactgttttatgct 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 568 ccctcccaccaccaccacacatacacacacggagcaccttagcaaatgctgttttatgct 509
Query: 121 tctcattccacaacaatgaaccatggtttttaaaacttgtgaggagaaaaagtggctatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctcattccacaacaatgaaccatggtttttaaaacttgtgaggagaaaaagtggctatc 449
Query: 181 atatgtaatcctaccattacccattctgttccttttctaggtaaaatgaatgcaaaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atatgtaatcctaccattacccattctgttccttttctaggtaaaatgaatgcaaaaaac 389
Query: 241 ttactaataagaaaatgtcctgccattaatttcatatatcatgaggatatataaccgccc 300
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 388 ttactaataagaaaatgtcctgccattaatttcatatatcatgagggtatataaccaccc 329
Query: 301 atgccaaaaaaaaaaatgcttcaaattaatctcctcttgtgaaggtgtcctgttgttaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atgccaaaaaaaaaaatgcttcaaattaatctcctcttgtgaaggtgtcctgttgttaat 269
Query: 361 tt--tatgtcttgaggatttgtgaccacctatgcaacagataaatcccctgtcataaacg 418
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 268 tttatatgtcttgaggatttgtgaccacctatgcaacagataaatcccctctcataaacg 209
Query: 419 cttgacaa 426
||||||||
Sbjct: 208 cttgacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 828
Length adjustment: 9
Effective length of query: 417
Effective length of database: 819
Effective search space: 341523
Effective search space used: 341523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
