Query= MSMg01no382_l08.b1 MSMg01no382_l08.b1 CHROMAT_FILE:
MSMg01no382_l08.b1 PHD_FILE: MSMg01no382_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:32 2005
(541 letters)
>mm_chr2_81460686_81461626
Length = 941
Score = 951 bits (492), Expect = 0.0
Identities = 529/546 (96%), Gaps = 9/546 (1%)
Strand = Plus / Minus
Query: 5 gaattctacatcttgttcagaaggaaaacaagagaagactgacttctagacagctaagag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattctacatcttgttcagaaggaaaacaagagaagactgacttctagacagctaagag 685
Query: 65 gagggtctcaaagcc--------cagtgacacacactaacaaggctatccctactccaaa 116
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagggtctcaaagcccagccccacagtgacacacactaacaaggctatccctactccaaa 625
Query: 117 aaggccacacctcttaatagtgccattcccttggcaaaccacattcaaaccggaacatgc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaggccacacctcttaatagtgccattcccttggcaaaccacattcaaaccggaacatgc 565
Query: 177 acctctatgccttgtgagtataaattatatcagtataaaccttaaatctataatattatg 236
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 564 acctctatgccttgtaagtataaattatattagtataaaccttaaatctataatattatg 505
Query: 237 ttgtttatataaaaactccaatattattttaagtagtctatatgattaactgacatgaaa 296
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcgtttatataaaaactccaatattattttaagtagtctatatgattaactgacatgaaa 445
Query: 297 atttatgtttttactcttttaatattaatattgccagttatgccataattttgctcccaa 356
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 atttatgtttttattcttttaatattaacattgccagttatgccataattttgctcccaa 385
Query: 357 tatttctatttttgattagaataggcttttgacaaaatttaccatcttttcatgatgaaa 416
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttctacttttgattagaataggcttttgacaaaatttaccatcttttcatgatgaaa 325
Query: 417 gtcgtaaa-aacctagcagtgaaccagcatatctcgccacaataaaggcaatatacaaga 475
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gtcgtaaagaacctagcagtgaaccagcatatctcaccacaataaaggcaatatacaaga 265
Query: 476 ccacagccatcaccattctaagtggagacatactcaaaacatttccactaatatcatcag 535
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 ccacagccatcaccattctaagtggagacatactcaaaacatttctactaatatcatcag 205
Query: 536 caagat 541
||||||
Sbjct: 204 caagat 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_l08.g1 MSMg01no382_l08.g1 CHROMAT_FILE:
MSMg01no382_l08.g1 PHD_FILE: MSMg01no382_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:32 2005
(513 letters)
>mm_chr2_81269775_81270687
Length = 913
Score = 977 bits (505), Expect = 0.0
Identities = 511/513 (99%)
Strand = Plus / Plus
Query: 1 caattccaatgatatctgggaatgtgatagatttctctctgcactgaaaaatactctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattccaatgatatctgggaatgtgatagatttctctctgcactgaaaaatactctggc 260
Query: 61 agcctggttgatgtccagaatggagacactgggccatgccctgtaactgcaccatcattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctggttgatgtccagaatggagacactgggccatgccctgtaactgcaccatcattc 320
Query: 121 ggtgcaaggagacctgtatacattgcactcaaaaataactggaaaacagctactcaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgcaaggagacctgtatacattgcactcaaaaataactggaaaacagctactcaaatt 380
Query: 181 gcttttgttcctaaaattaaccaattaaacacaggtaataccaaatcttccatatcaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttttgttcctaaaattaaccaattaaacacaggtaataccaaatcttccatatcaata 440
Query: 241 gccattaatctatttttataagatttaaagcctatgctagtagtcaatatctagtaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccattaatctatttttataagatttaaagcctatgctagtagtcaatatctagtaaatg 500
Query: 301 gcagtaattggctgtctgcaaaggataatactttaaaagtttttggaaaatttaggaaaa 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gcagtaattggttgtctgcaaaggataatactttaaaagtttttggaaaatttgggaaaa 560
Query: 361 tgtgagcaatcatatattagctgatcagttataagaaccatggcaatcattggacagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgagcaatcatatattagctgatcagttataagaaccatggcaatcattggacagaaa 620
Query: 421 ataaacttattctatttttaaatttaagcttcaaatacaaattttaaaattatgttttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaacttattctatttttaaatttaagcttcaaatacaaattttaaaattatgttttgg 680
Query: 481 taaatactaaaataccccacctagggataaaat 513
|||||||||||||||||||||||||||||||||
Sbjct: 681 taaatactaaaataccccacctagggataaaat 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
