BAC Information

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BAC

Clone NameMSMg01-382L12
Chromosome2 (Build37)
Map Location 28,205,966 - 28,375,479
singlet/doubletdoublet
Overlap geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds
Upstream geneVav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1, Fcnb, Olfm1
Downstream geneCel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382L12.T7 (MSMg01no382_l12.b1)MSMg01-382L12.TJ (MSMg01no382_l12.g1)
ACCAG486557AG486558
length768761
length of high quality
(start - end)		495 (32 - 526)484 (61 - 544)
definitionCHROMAT_FILE: MSMg01no382_l12.b1 PHD_FILE: MSMg01no382_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:33 2005CHROMAT_FILE: MSMg01no382_l12.g1 PHD_FILE: MSMg01no382_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,374,988 - 28,375,479)(28,205,966 - 28,206,449)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCTGTAT
TCCAGGCTGGCCTTGAACTCAGAAATCTATCTGCCTCTGCCTCCCAAGTG
CTGGGATTAAAGGCATGCACCACCACTGCCGGGCCCAGTTTGAACTTTAC
TGGGCTATCTCACCTACCCCCAGTCTCTTGGGACATGTCACCTCTAGGGT
CAGGATGGAATCCGGGAAGAGACAGAAGAGGAGGTAGGTTACACAGGCCC
ACCTCTCCTCATCTCCTTTGGCAATAAAGGGCCTTGGGCAGTGCTCAAGG
GCAACGGCACAGTCCTCTTCAGGGGAACAGACTCTGGGTTTCAACTCAGA
GGAGGCGAGCAGGGAGAGGACTCAGTCCTCTCATCCAGCCCCACAAGAGC
AAGAAGCCTCAGCTCCTTAATTATGCACCCAGTCTAAGGGCAGGGCTACA
AGGCCAGTCCAGGAGGTAGTCAGAGGCCACCTCTTGCTCGACTGTGTCCC
TGAACAGCCTTCTTCCAGCACAGGGTTGGACTCCACAAATGAACATAGCA
GCACCTAAGGGGATCTATAGGTACCTATTCCCTTGCTGGGAAGGCAGGAG
TGGGAATTCCCTTGGAAAAAGGGTAAGGTGAAAGGCAGATAAAACCCTGA
TCGCTTCTTTATAGTTGTTTGTCTGTACCTCTTTTCCTCATAATACAAAG
TCAGCGCCACGCCTATTCTCTATTTTTTTTTTGGTCCTCCTGGCCTTCTA
TTTGAATATTGTCTCATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGGGAACAAAGGTATGAGGTCATCCTCTAGCCCTGGGACA
ATTTCCTAGCTGATACCAAGAGTGTGTGAAAGGGAAAATTGATTAAAAAA
AATAACCAGCCTTAATCACAATTAAAATGGTTACCTTCTGAACAATATTT
TATCCAACCAGCATTTGGCCAGGTATCTGGCACATTCCATAAAGACTAAA
GGGATAAAAATAAATGAGTTGTTCTTCAGACAACAGAACTGAGATTTCAT
CTCACTTAGATCAAAGAAATGCCAATGCTCTCCGCTATGATCATAACGTG
AAGCCATTTACAAAGTAAATACAGAGAGGACCTCGTGCATCTGAGGGAGG
CAGGCTTCAAAGGATTGCAGAGGAGAGGGCCCACAATTCACCCGCAGACA
CTGAGTGTCTCTCAAGCTTGGCAACGTCCTCAGGATGCAGCTCTTTACCA
CAGCCACTCAGTGTGAGCAAGCCTTCAGAACAACATGCAGTAGAGTCGGT
GTGATGGGCAGATGGTTTAAATGGCTTTCCACGGGCACTGGAGATTGCTC
AGTGGTTAAAAACACTGCAGAAGCCCAGGGTTCATTTCCCCACTTCTATT
TGTAGCTCACACCCTTTTATACCTTTCTTGAAGAAAACTGAATCTCCCTC
CTACCCCCCAGGGAAACTGGATTTGTGGCCCCTCTTCTTGTTGCCATTGC
CCACATAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_l12.b1 MSMg01no382_l12.b1 CHROMAT_FILE:
MSMg01no382_l12.b1 PHD_FILE: MSMg01no382_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:33 2005
         (495 letters)



>mm_chr2_28374685_28375579
          Length = 895

 Score =  882 bits (456), Expect = 0.0
 Identities = 483/492 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtattccaggctggccttgaactcagaaatctatctgcctctgcctcc 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggaattcactctgtagaccaggctggccttgaactcagaaatctatctgcctctgcctcc 736

                                                                       
Query: 64  caagtgctgggattaaaggcatgcaccaccactgccgggcccagtttgaactttactggg 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 735 caagtgctgggattaaaggcatgcgccaccactgccgggcccagtttgaactttactggg 676

                                                                       
Query: 124 ctatctcacctacccccagtctcttgggacatgtcacctctagggtcaggatggaatccg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctatctcacctacccccagtctcttgggacatgtcacctctagggtcaggatggaatccg 616

                                                                       
Query: 184 ggaagagacagaagaggaggtaggttacacaggcccacctctcctcatctcctttggcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggaagagacagaagaggaggtaggttacacaggcccacctctcctcatctcctttggcaa 556

                                                                       
Query: 244 taaagggccttgggcagtgctcaagggcaacggcacagtcctcttcaggggaacagactc 303
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 555 taaagggccttgggcagtgctcaagggcaacggctcagccctcttcaggggaacagactc 496

                                                                       
Query: 304 tgggtttcaactcagaggaggcgagcagggagaggactcagtcctctcatccagccccac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 495 tgggtttcaactcagaggaggcgagcagggagaggactcagtcctctcacccagccccgc 436

                                                                       
Query: 364 aagagcaagaagcctcagctccttaattatgcacccagtctaagggcagggctacaaggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aagagcaagaagcctcagctccttaattatgcacccagtctaagggcagggctacaaggc 376

                                                                       
Query: 424 cagtccaggaggtagtcagaggccacctcttgctcgactgtgtccctgaacagccttctt 483
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 375 cagtccaggaggtagccagaggccacctcttgctagactgtgtccctgaacagccttctt 316

                       
Query: 484 ccagcacagggt 495
           ||||||||||||
Sbjct: 315 ccagcacagggt 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_l12.g1 MSMg01no382_l12.g1 CHROMAT_FILE:
MSMg01no382_l12.g1 PHD_FILE: MSMg01no382_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:33 2005
         (484 letters)



>mm_chr2_28205766_28206649
          Length = 884

 Score =  936 bits (484), Expect = 0.0
 Identities = 484/484 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaacaaaggtatgaggtcatcctctagccctgggacaatttcctagctgataccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaacaaaggtatgaggtcatcctctagccctgggacaatttcctagctgataccaag 260

                                                                       
Query: 61  agtgtgtgaaagggaaaattgattaaaaaaaataaccagccttaatcacaattaaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtgtgaaagggaaaattgattaaaaaaaataaccagccttaatcacaattaaaatgg 320

                                                                       
Query: 121 ttaccttctgaacaatattttatccaaccagcatttggccaggtatctggcacattccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccttctgaacaatattttatccaaccagcatttggccaggtatctggcacattccat 380

                                                                       
Query: 181 aaagactaaagggataaaaataaatgagttgttcttcagacaacagaactgagatttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagactaaagggataaaaataaatgagttgttcttcagacaacagaactgagatttcat 440

                                                                       
Query: 241 ctcacttagatcaaagaaatgccaatgctctccgctatgatcataacgtgaagccattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcacttagatcaaagaaatgccaatgctctccgctatgatcataacgtgaagccattta 500

                                                                       
Query: 301 caaagtaaatacagagaggacctcgtgcatctgagggaggcaggcttcaaaggattgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaagtaaatacagagaggacctcgtgcatctgagggaggcaggcttcaaaggattgcag 560

                                                                       
Query: 361 aggagagggcccacaattcacccgcagacactgagtgtctctcaagcttggcaacgtcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggagagggcccacaattcacccgcagacactgagtgtctctcaagcttggcaacgtcct 620

                                                                       
Query: 421 caggatgcagctctttaccacagccactcagtgtgagcaagccttcagaacaacatgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggatgcagctctttaccacagccactcagtgtgagcaagccttcagaacaacatgcag 680

               
Query: 481 taga 484
           ||||
Sbjct: 681 taga 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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