Query= MSMg01no383_a07.b1 MSMg01no383_a07.b1 CHROMAT_FILE:
MSMg01no383_a07.b1 PHD_FILE: MSMg01no383_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:56 2005
(544 letters)
>mm_chr2_139270942_139271885
Length = 944
Score = 990 bits (512), Expect = 0.0
Identities = 533/540 (98%), Gaps = 2/540 (0%)
Strand = Plus / Minus
Query: 6 gaattcaagagtatgtgtg-caaactggcattgattccatgcaaatcaggtcttattaaa 64
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattcaagagtatgtgtgac-aactggcattgattccatgcaaatcaggtcttattaaa 686
Query: 65 agtcatgtatgactaagaagaggcttggggccttcaacttcctgctgatctatttgcagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtcatgtatgactaagaagaggcttggggccttcaacttcctgctgatctatttgcagc 626
Query: 125 taatagagataccacccagttttatacacaccagtgagcccacagatctctaacaattag 184
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 625 taatatagataccacccagttttatacacaccagtgagcccacagatctctgacaattag 566
Query: 185 ttgcaaaacccaggattatacaggcagttcctagtaaaaccccactggatactagacaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgcaaaacccaggattatacaggcagttcctagtaaaaccccactggatactagacaga 506
Query: 245 acaaaaaccaaatgaatgttgcagggatttatatggaaggagtcagactggcaggccctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaaaaaccaaatgaatgttgcagggatttatatggaaggagtcagactggcaggccctg 446
Query: 305 aaggaaaataaggggttgggagaaagtaaccagaatgtatgaaattgtcaaagaacagca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggaaaataaggggttgggagaaagtaaccagaatgtatgaaattgtcaaagaacagca 386
Query: 365 cttattaatataaaaagaaagaaaccgaaacagaaatcaagactaaagctgtgaaaaaca 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttattaatataaaaagaaagaaaccgaaacagaaatcaagactaaagctgtgaaaaaca 326
Query: 425 cagcttttcaaatcagaaagaggaagtttcaagcaaaactatttttttctaataaaggaa 484
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 cagcttttcaaatcagaaagaggaagtttcaagcaaaaaaatttttttctaataaaggaa 266
Query: 485 ataaagttgtctagaagatgtaggaggactttgaaagcaaatataaaataagaatgtttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataaagttgtctagaagatgtaggaggactttgaaagcaaatataaaataagaatgtttt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_a07.g1 MSMg01no383_a07.g1 CHROMAT_FILE:
MSMg01no383_a07.g1 PHD_FILE: MSMg01no383_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:56 2005
(515 letters)
>mm_chr2_139220714_139221628
Length = 915
Score = 980 bits (507), Expect = 0.0
Identities = 513/515 (99%)
Strand = Plus / Plus
Query: 1 tggttttttctcttgcttttactttgttgagcatttcaaatgcactatttcattgtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttttttctcttgcttttactttgttgagcatttcaaatgcactatttcattgtcttt 260
Query: 61 gttcttggataatttctcagcaatagttaaggaattgtttcttcctataatggtcagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttggataatttctcagcaatagttaaggaattgtttcttcctataatggtcagcta 320
Query: 121 tttttttcttgctacttaaagaatgtcttcatgttttcagctattgacagttagattata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttttcttgctacttaaagaatgtcttcatgttttcagctattgacagttagattata 380
Query: 181 agatgtccaggtgcaattgcttttgaagcttgaagcttattgacattcttgaatatgtac 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgtccaggtgaaattgcttttgaagcttgaagcttattgacattcttgaatatgtac 440
Query: 241 attaatgtttctgatgaaacctgggacgtttccaaccactaatcaaataaaggttttgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaatgtttctgatgaaacctgggacgtttccaaccactaatcaaataaaggttttgct 500
Query: 301 ttctccctcttctctcccagcgcacatatttaagtttgcatagtgttattctgtaagtat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctccctcttctctcccagcgcacatatttaagtttgcatagtgttattctgtaagtat 560
Query: 361 ctaaggagccattcatttactgtgctaatttatatagacctatttcccaaaggaatatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaggagccattcatttactgtgctaatttatatagacctatttcccaaaggaatatct 620
Query: 421 tctcatagacagtatgcaagacaaacaaaccaagagatcatggcagcaggtgttaagtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcatagacagtatgcaagacaaacaaaccaagagatcatggcagcaggtgttaagtca 680
Query: 481 gaaaccaaattagcaaagaaaaagtgaaatctgac 515
|||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaccaaattagcaaagaaaaagtgaaatctgac 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
