Query= MSMg01no383_d22.b1 MSMg01no383_d22.b1 CHROMAT_FILE:
MSMg01no383_d22.b1 PHD_FILE: MSMg01no383_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:15 2005
(518 letters)
>mm_chr2_38935722_38936639
Length = 918
Score = 820 bits (424), Expect = 0.0
Identities = 434/442 (98%), Gaps = 8/442 (1%)
Strand = Plus / Minus
Query: 77 aggttgtagtatgtagggccaaagaaagaaaatgttgacattgaagagccagccagaaag 136
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 918 aggttgtagtatgtagggccaaagaaagaaaatgttgacattgaagagcc--------ag 867
Query: 137 ccagaagtggtagcacatacctatcatcccacacttgggaggtaaaaagacaggaggata 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ccagaagtggtagcacatacctatcatcccacacttgggaggtaaaaagacaggaggata 807
Query: 197 agataggaggatcaggagttcagtgttgtccttagctacttcatgagttcaaggccagcc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agataggaggatcaggagttcagtgttgtccttagctacttcatgagttcaaggccagcc 747
Query: 257 taggctccataagactctatctcaaaaagggcctgcctgcgttacagagaaagacaacaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 taggctccataagactctatctcaaaaagggcctgcctgcgttacagagaaagacaacaa 687
Query: 317 atcatgaaagtatgcaaatcagatgctcatcagatacttacatcatggatgcttcatggt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atcatgaaagtatgcaaatcagatgctcatcagatacttacatcatggatgcttcatggt 627
Query: 377 caacacttgccacattcagatgaagttggctagttgttgttcagataataaggaatgtgt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caacacttgccacattcagatgaagttggctagttgttgttcagataataaggaatgtgt 567
Query: 437 ttatcattcataatgaaggaggctctgtatttttattttatttagaaggcaatatgccta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttatcattcataatgaaggaggctctgtatttttattttatttagaaggcaatatgccta 507
Query: 497 ggatgtgttttcatagcttcag 518
||||||||||||||||||||||
Sbjct: 506 ggatgtgttttcatagcttcag 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_d22.g1 MSMg01no383_d22.g1 CHROMAT_FILE:
MSMg01no383_d22.g1 PHD_FILE: MSMg01no383_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:16 2005
(519 letters)
>mm_chr2_38749660_38750578
Length = 919
Score = 888 bits (459), Expect = 0.0
Identities = 499/523 (95%), Gaps = 21/523 (4%)
Strand = Plus / Plus
Query: 1 atgccagcctgagctacatgaaactttatttcaaaaaacaaacaaacaaacaaacaaacg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atgccagcctgag-tacatgaaactttatttcaaaaaacaaacaaacaaacaaaca---- 268
Query: 61 aacaaaaaaaagtttaatataaaagtgtaatatggaagcatgatgatctgagatatctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aacaaaaaaaagtttaatataaaagtgtaatatggaagcatgatgatctgagatatctaa 328
Query: 121 tcaagaacagaaataataaagaacataggagccgggtagtagtagagcacttgggaggca 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 329 tcaagaacagaaataataaagaacataggagccgggtagtagtggagcacttgggaggca 388
Query: 181 gaggctggcagatctgagtttgaggccagcctggtctacagagtgagttccaggacagcc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaggctggcagatctgagttcgaggccagcctggtctacagagtgagttccaggacagcc 448
Query: 241 aggactac----ttttataaaccctgtctcgaaaaaacagaaagagagagaaagagagag 296
|||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 449 aggactacacag----agaaaccctgtctcgaaaaaacagaaag--------agagagag 496
Query: 297 agagaaaaaagaaaaaagaaaagaagaaagaaggaaagaatgaacggaacaaacatagga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agagaaaaaagaaaaaagaaaagaagaaagaaggaaagaatgaacggaacaaacatagga 556
Query: 357 tgaaatgtggaagacacctaaaaattcaaccatagggaatgattacattctagtatacat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgaaatgtggaagacacctaaaaattcaaccatagggaatgattacattctagtatacat 616
Query: 417 attgttcattatggtattttctgaacgttacatatgtgtaacgttggttgtggtataaga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attgttcattatggtattttctgaacgttacatatgtgtaacgttggttgtggtataaga 676
Query: 477 ggccagaggtggtgatacactcctgaaatcccatggaaggcat 519
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggccagaggtggtgatacactcctgaaatcccatggaaggcat 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
