BAC Information

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BAC

Clone NameMSMg01-383E09
Chromosome2 (Build37)
Map Location 138,057,927 - 138,237,915
singlet/doubletdoublet
Overlap geneBtbd3
Upstream genenone
Downstream geneLOC628103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383E09.T7 (MSMg01no383_e09.b1)MSMg01-383E09.TJ (MSMg01no383_e09.g1)
ACCAG486981AG486982
length764768
length of high quality
(start - end)		450 (54 - 503)442 (67 - 508)
definitionCHROMAT_FILE: MSMg01no383_e09.b1 PHD_FILE: MSMg01no383_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:18 2005CHROMAT_FILE: MSMg01no383_e09.g1 PHD_FILE: MSMg01no383_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,237,468 - 138,237,915)(138,057,927 - 138,058,368)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACTGATTA
TCCGCTTATTTATTGGCATTATCTCCTCCCACCAACTTCTCTGCCACTGA
AACTAAAGCATAAAATCCTGGGAAGGGAGATGTGTGCACCTGACCTAGGG
AAGACTGGAAAATAGAACACTAATTCCAAAGTAGCCAAGGAACCAGGAGG
TGCGGAACTCCAGGACTTCATCTGCAAAACCAGAAATGGTGATTGTTTTG
GTCTGTTGTTGTTTTGTAAAGTTTTCTTTTCTTTTTTAAAAAGATAGTGG
AATAAACTTGTTTTGTTTGTTTTGTGAACCAAATGCTGGAGAATCTGGAG
AGCTTGAGAGTGAAAAGGAAATGACTTCCTGGGCATTTTCTGAACCATAG
GGAGGGAAATGAGCCTTCCTGTGCTTAGGTTAATGAGAAGAAACCCAGGA
AATCTGCCATCAAGGGAAACAAACATATAACTTCCCATTGGAACGTCTAA
GAAGATAATCCACTGGGATGTTCGTTTACAGCAGCCAGGCCCTGTCTTGG
CAAAAAACAATGAGGAGCTCCTAATTCCGCTTTGTTCTAGGACCCTACCT
GTGGAAGAAGGATTTCTGGGGGGGGTTTCCTTTGGCTGAACATCTGTTGT
TGTTCCTTTTTCCCCTGCCTACCTCTTGTTATATATTCTTACTTCCTTTT
ATCACTTATTATTATCATACCATATCCTTCTCCTTATTCTCCCTTTCTCT
TTCTCCCCCTTTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTAAGACTTTTTTTTTTTGGTTTTCACACAAT
ACTTGTTCAATCTGCCAGAAGAGACTGTGAGAAATCCTGCCAAGTAGCCA
CGTTCACAAGAGCATTAGAACCCAGGATTTTTTTCCCTGGGGGGCAGCTA
TATAGGCAGCATCAGACTGGTGTGCACCATGTAGGCAACATCTGACTGAT
GTGCAGAAAAGTTCCAGCTTCCAAGGGTGAACAGTTTAGACTCACAGTGC
CACTCCCACTTAGTGATGACTCCCTGGTTTCCCTTCCTTGTGAGAAGACC
TTCAAGTCAGACCTGCTATGCCACTTCTGGGCTGCAAAACCGGAGGAGGT
CAGCAAGCAAAGATCGTGTCCTTCACTAAGGTAGCTGTAAAGGGGAGAAG
AGAAATCCGATGACAGGTGGAGGAAACATAGTGTGTTATTTTTAGTAGAA
GTGAGATTACAGGGGGTGTGAATGCTTATAGGAATAGCACAGCCAGGAGA
GAAAAATATAGTCTCCGAAGACCGTGGGAAAATTGCAGAGAAGAAAAGGG
TGGAACTTTCGTGCTAACTCATCCCTTAACCTTGAGATTGAGTTGGTCTC
TTTATCTATAGTTCTTTCAACACACCCCCTTTTTATTTGTTTAAAATATC
TATTTTTTTCTTTTTCTGGATCTCCTATTTATATTTTGACTTCGTACGTC
TTTTATTTTATTTTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_e09.b1 MSMg01no383_e09.b1 CHROMAT_FILE:
MSMg01no383_e09.b1 PHD_FILE: MSMg01no383_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:18 2005
         (450 letters)



>mm_chr2_138237266_138238115
          Length = 850

 Score =  859 bits (444), Expect = 0.0
 Identities = 447/448 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttatttattggcattatctcctcccaccaacttctctgccactgaaactaaagcataaaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttatttattggcattatctcctcccaccaacttctctgccactgaaactaaagcataaaa 591

                                                                       
Query: 63  tcctgggaagggagatgtgtgcacctgacctagggaagactggaaaatagaacactaatt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcctgggaagggagatgtgtgcacctgacctagggaagactggaaaatagaacactaatt 531

                                                                       
Query: 123 ccaaagtagccaaggaaccaggaggtgcggaactccaggacttcatctgcaaaaccagaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ccaaagtagccaaggaaccaggaggtgcggaactccaggacttcatctgcaaaaccagaa 471

                                                                       
Query: 183 atggtgattgttttggtctgttgttgttttgtaaagttttcttttcttttttaaaaagat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 470 atggtgattgttttggtctgttgttgttttgtaaagttttcttttcttttttaaaaagag 411

                                                                       
Query: 243 agtggaataaacttgttttgtttgttttgtgaaccaaatgctggagaatctggagagctt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agtggaataaacttgttttgtttgttttgtgaaccaaatgctggagaatctggagagctt 351

                                                                       
Query: 303 gagagtgaaaaggaaatgacttcctgggcattttctgaaccatagggagggaaatgagcc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gagagtgaaaaggaaatgacttcctgggcattttctgaaccatagggagggaaatgagcc 291

                                                                       
Query: 363 ttcctgtgcttaggttaatgagaagaaacccaggaaatctgccatcaagggaaacaaaca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttcctgtgcttaggttaatgagaagaaacccaggaaatctgccatcaagggaaacaaaca 231

                                       
Query: 423 tataacttcccattggaacgtctaagaa 450
           ||||||||||||||||||||||||||||
Sbjct: 230 tataacttcccattggaacgtctaagaa 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_e09.g1 MSMg01no383_e09.g1 CHROMAT_FILE:
MSMg01no383_e09.g1 PHD_FILE: MSMg01no383_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:18 2005
         (442 letters)



>mm_chr2_138057727_138058568
          Length = 842

 Score =  816 bits (422), Expect = 0.0
 Identities = 437/442 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaagactttttttttttggttttcacacaatacttgttcaatctgccagaagagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaagactttttttttttggttttcacacaatacttgttcaatctgccagaagagact 260

                                                                       
Query: 61  gtgagaaatcctgccaagtagccacgttcacaagagcattagaacccaggatttttttcc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gtgagaaatcctgccaagtagccacgttcacaacagcattagaacccaggatttttttcc 320

                                                                       
Query: 121 ctggggggcagctatataggcagcatcagactggtgtgcaccatgtaggcaacatctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ctggggggcagctatataggcagcatcagactggtgtgcaccatgtaggtaacatctgac 380

                                                                       
Query: 181 tgatgtgcagaaaagttccagcttccaagggtgaacagtttagactcacagtgccactcc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgtgcagaaaagttccggcttccaagggtgaacagtttagactcacagtgccactcc 440

                                                                       
Query: 241 cacttagtgatgactccctggtttcccttccttgtgagaagaccttcaagtcagacctgc 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacttagtgatgactctctggtttcccttccttgtgagaagaccttcaagtcagacctgc 500

                                                                       
Query: 301 tatgccacttctgggctgcaaaaccggaggaggtcagcaagcaaagatcgtgtccttcac 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgccacctctgggctgcaaaaccggaggaggtcagcaagcaaagatcgtgtccttcac 560

                                                                       
Query: 361 taaggtagctgtaaaggggagaagagaaatccgatgacaggtggaggaaacatagtgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaggtagctgtaaaggggagaagagaaatccgatgacaggtggaggaaacatagtgtgt 620

                                 
Query: 421 tatttttagtagaagtgagatt 442
           ||||||||||||||||||||||
Sbjct: 621 tatttttagtagaagtgagatt 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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