BAC Information

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BAC

Clone NameMSMg01-383H11
Chromosome2 (Build37)
Map Location 25,928,639 - 26,107,361
singlet/doubletdoublet
Overlap geneBtbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik
Upstream geneEntpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1
Downstream gene4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383H11.T7 (MSMg01no383_h11.b1)MSMg01-383H11.TJ (MSMg01no383_h11.g1)
ACCAG487129AG487130
length753749
length of high quality
(start - end)		509 (41 - 549)495 (71 - 565)
definitionCHROMAT_FILE: MSMg01no383_h11.b1 PHD_FILE: MSMg01no383_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:31 2005CHROMAT_FILE: MSMg01no383_h11.g1 PHD_FILE: MSMg01no383_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,106,857 - 26,107,361)(25,928,639 - 25,929,133)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTCCGCTGGCAGCTCGTGTATCCTTTGGTATATCTCCCCTTCTATCTTG
TTGATGCAGGCCACCAAGAAAGATAGCACCTCAGCCTCTCAGCCAAAGCC
ACAGGAGGCCAAAGAACTGCCTTCTCCAGGTAAGGCTTCTGCAGATGATC
TGTGGATCACCCTCTATGGATCTTACCAGGAGCTTCCCCTCCATCCAGTG
GACCCTGTCCAAGGCTGGTGCTCAGCAGTCAAGCAAGGACAGGGAGGTCC
CCAGGGAAAGTCGAAGAGGACGAATGCTCATAGCCCCCCCACCATGACTG
CAGACCCCTTCATGGCTAGAAGGCTGGCTGACTCCATTGCCCATTGGAGA
TAATTTGGCTGCTCCTCTGGAGACATTAAAGACAATTTTTGGTCTGATCG
TTTCAGCTGCAGCTTGGTTTTATCTAGACATTTCCAAGAGCTTAGAAATC
AGCACTGACAGAAGCATCCTTATTAGCTGACCACAGTTTTATACCTATCA
AATTCTTCACTTTCTGAACCGTGTACTTGGTCCTGAGGCCTCTTTGAGGG
CAGAACTCCTGATCTGTAGGAGTGGGAGAGGCCCCTTCTCCTTTCTGGGG
TTGCCCTGGCCTGGGTGGCTCCCACAAAAAAGCCCCCTCTTGAATCCCCC
CCCTGCGTCCCACCCTGGGTTTAAAAATTCCCCCCTCCCCCCCATTTTGG
GTC

GCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGAGTCACACACTGTCTCTGTGCCCACCC
AAGACCAGGCCAACCTGGAAGAACTCCCAGCTCTGCCTTGAAACCTTGGT
ACAGCTTATAAGGTGGCCCATGCAACCTCCTCTTAGCACATCCGGGACTA
AGTAGGGCACCAAGCATGTCTCCACAGACTCCGGAGAGAGGGGGAGTCTG
AGTGTACTCCAGGACCACACAGGATTCAGTCTGCTAAGATGAGCCCAGTT
CTGCCTATGCTTGGAAATGACACAGATGCCATAAATTCACGGGCCATAGA
AGGAGGGGAGGGTGTCATACATTAAGAAAATATTTATGGAGACAATAAAG
ACAACAGAGCACACCAAAATGACTTGGCAACATGTAGGACCCTAACTGGC
ACTCAAAGGAGAGTGGGAACACTGGGCTCCATCCCAAAGAAGCGTCTTAC
AGGCCTAACAAGGTGGCGTTTATTTTATTAATATTACTTATTGTGGGATT
TAATGTTTTTAGTTGTTCTGTGGGTATGTGTGGCTTGTCAGGACACTTTG
CACTGCCCTATACCCCCCTGTAACTGGTATTCATTGTTCGTTGTATTTTG
ATCCCCAGTCCTCTTTAATATGAATCTTGTGTTCTCCTACTATTACCTCT
CATTCGATTATTAATATTATTGTAGTCACCCCCCACCTACCCTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_h11.b1 MSMg01no383_h11.b1 CHROMAT_FILE:
MSMg01no383_h11.b1 PHD_FILE: MSMg01no383_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:31 2005
         (509 letters)



>mm_chr2_26106653_26107561
          Length = 909

 Score =  946 bits (489), Expect = 0.0
 Identities = 501/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctccgctggcagctcgtgtatcctttggtatatctccccttctatcttgttga 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattctctccgcaggtagctcgtgtatcctttggtatatctccccttctatcttgttga 650

                                                                       
Query: 65  tgcaggccaccaagaaagatagcacctcagcctctcagccaaagccacaggaggccaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgcaggccaccaagaaagatagcacctcagcctctcagccaaagccacaggaggccaaag 590

                                                                       
Query: 125 aactgccttctccaggtaaggcttctgcagatgatctgtggatcaccctctatggatctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aactgccttctccaggtaaggcttctgcagatgatctgtggatcaccctctatggatctt 530

                                                                       
Query: 185 accaggagcttcccctccatccagtggaccctgtccaaggctggtgctcagcagtcaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 accaggagcttcccctccatccagtggaccctgtccaaggctggtgctcagcagtcaagc 470

                                                                       
Query: 245 aaggacagggaggtccccagggaaagtcgaagaggacgaatgctcatagcccccccacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aaggacagggaggtccccagggaaagtcgaagaggacgaatgctcatagcccccccacca 410

                                                                       
Query: 305 tgactgcagaccccttcatggctagaaggctggctgactccattgcccattggagataat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 409 tgactgcagaccccttcatggctagaaggctggctgactccattgcccattggagatgat 350

                                                                       
Query: 365 ttggctgctcctctggagacattaaagacaatttttggtctgatcgtttcagctgcagct 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttggctgctcctctggggacattaaagacaatttttggtctgatcgtttcagctgcagct 290

                                                                       
Query: 425 tggttttatctagacatttccaagagcttagaaatcagcactgacagaagcatccttatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tggttttatctagacatttccaagagcttagaaatcagcactgacagaagcatccttatt 230

                                    
Query: 485 agctgaccacagttttatacctatc 509
           |||||||||||||||||||||||||
Sbjct: 229 agctgaccacagttttatacctatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_h11.g1 MSMg01no383_h11.g1 CHROMAT_FILE:
MSMg01no383_h11.g1 PHD_FILE: MSMg01no383_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:31 2005
         (495 letters)



>mm_chr2_25928439_25929333
          Length = 895

 Score =  942 bits (487), Expect = 0.0
 Identities = 493/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagtcacacactgtctctgtgcccacccaagaccaggccaacctggaagaactcccag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aagagtcacacactgtctctgtgcccacccaagaccaggccaatctggaagaactcccag 260

                                                                       
Query: 61  ctctgccttgaaaccttggtacagcttataaggtggcccatgcaacctcctcttagcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgccttgaaaccttggtacagcttataaggtggcccatgcaacctcctcttagcaca 320

                                                                       
Query: 121 tccgggactaagtagggcaccaagcatgtctccacagactccggagagagggggagtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccgggactaagtagggcaccaagcatgtctccacagactccggagagagggggagtctg 380

                                                                       
Query: 181 agtgtactccaggaccacacaggattcagtctgctaagatgagcccagttctgcctatgc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtactccaggaccacacaggattcagtctgctaagatgagcccagttctgcctatgc 440

                                                                       
Query: 241 ttggaaatgacacagatgccataaattcacgggccatagaaggaggggagggtgtcatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggaaatgacacagatgccataaattcacgggccatagaaggaggggagggtgtcatac 500

                                                                       
Query: 301 attaagaaaatatttatggagacaataaagacaacagagcacaccaaaatgacttggcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaagaaaatatttatggagacaataaagacaacagagcacaccaaaatgacttggcaa 560

                                                                       
Query: 361 catgtaggaccctaactggcactcaaaggagagtgggaacactgggctccatcccaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgtaggaccctaactggcactcaaaggagagtgggaacactgggctccatcccaaaga 620

                                                                       
Query: 421 agcgtcttacaggcctaacaaggtggcgtttattttattaatattacttattgtgggatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcgtcttacaggcctaacaaggtggcgtttattttattaatattacttattgtgggatt 680

                          
Query: 481 taatgtttttagttg 495
           |||||||||||||||
Sbjct: 681 taatgtttttagttg 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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