BAC Information

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BAC

Clone NameMSMg01-383K17
Chromosome2 (Build37)
Map Location 120,460,353 - 120,702,361
singlet/doubletdoublet
Overlap geneStard9, Cdan1, Ttbk2, Ubr1
Upstream geneNusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27
Downstream geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383K17.T7 (MSMg01no383_k17.b1)MSMg01-383K17.TJ (MSMg01no383_k17.g1)
ACCAG487285AG487286
length760763
length of high quality
(start - end)		463 (58 - 520)442 (70 - 511)
definitionCHROMAT_FILE: MSMg01no383_k17.b1 PHD_FILE: MSMg01no383_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:46 2005CHROMAT_FILE: MSMg01no383_k17.g1 PHD_FILE: MSMg01no383_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,701,899 - 120,702,361)(120,460,353 - 120,460,794)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGTTTT
ATACCAGCTAAGGATAGGCTTATAGTAAAGAAAATGTACTTTGATTTTTA
CCTTGAAGTAAAATGTTGTAGATTAGAACTGTTTGTTTTAGATAAAAGTA
GAAAATAAGTTGCCTTGTTATAGTGATTATACCTTGATATATGTAAATAG
TTAAAAGCTTTTGAAAATTTTAATTATTAATGTGGGAACTAATTTTGCAT
TTATATTTTAATCTGCATATACTGTATAATCACTATATATAATATATACA
GCCAATTTAAGTTTACAAGGAAATTGAGCAGAGAATTAAAATGTTCACTT
TTGCCGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGA
GGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC
CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAAAAAATGT
TCACTTTTATTTCCCTGTACACAGTTTTGTATTTTGGTGATTCGCTTGTT
AAAACCGGAAGAACCAATAATGTTGACATGCTATCGTTACTTGAAAGCCA
TAACTTTGAATATTTAAAGCTTGAACATTTGCGCCTCCTCCTTATCCCCC
CAATATCGTCCGGGTCTTTTTGGCCTCATCGACCACCTCTTTTTTTTTTT
TTTCTTTCACACCCTTCCCCTCCCTATCTTTTTTCCCCTTCATTCTTTTG
TCCCACGTTA

ACAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTAGCTGTCCTCAGACACACCAGAAGAGGC
CATCAGATCCCATTACAGATGTTTGTGAGCCACCATGTGGTTGCCTGGAA
TTGAACTCAGGACCTCTGGAAGAGCAGTCACTGCTCTTAACCGCTGAGCC
ACCTCTCCAGCCCAGTGACTGTTATTTATGATCTATAGAGATGGTAGTGA
GTGGCATCATTTTTTTGAAAAATGATTCAAAAAGGTGGGAAAAGACTGCT
TGGTCAAGGAGTAGGAGCTTCGGTAATGTCCATTTCCAATTTGGGCCTCA
GTGTGCTTCACGTGGGGTGCAATGCAGTTAGTCTTCTGCTGCACGGCCTT
GAACTGTGTGCAGCAGGACTGGAGAATCCTAGAGGCTAATCTGTCCTTAT
GACCTTAAGTGTGTACTTGTGCTCCTACACAGATTCTGAAAGGGATAGAT
AGGTAGGCTGTAAGACTGCAAGAGTGTATAGGAGGTCAGTTCCAAAGTTC
TGATGGCTGAGCATTGAGAGGAAAAAGCTTTGCTGGCTGAGCTGAAAGCG
TTGCTGGGCATCCTTCTCGATGCATCGAAGTTTTTGTTAATCTTTTCCCA
AGTGGCCAAGCACCCACAAGTGTGGGTAGGTGGTCCCTTTTGTGCCTTTT
TTTTTTGAAATCTTACCCCGGTGTTTGTGTATGATTCTCTCATCTCCCTT
CAATTATATATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_k17.b1 MSMg01no383_k17.b1 CHROMAT_FILE:
MSMg01no383_k17.b1 PHD_FILE: MSMg01no383_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:46 2005
         (463 letters)



>mm_chr2_120701867_120702729
          Length = 863

 Score =  880 bits (455), Expect = 0.0
 Identities = 461/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaggataggcttatagtaaagaaaatgtactttgatttttaccttgaagtaaaatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctaaggataggcttatagtaaagaaaatgtactttgatttttaccttgaagtaaaatgtt 436

                                                                       
Query: 61  gtagattagaactgtttgttttagataaaagtagaaaataagttgccttgttatagtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtagattagaactgtttgttttagataaaagtagaaaataagttgccttgttatagtgat 376

                                                                       
Query: 121 tataccttgatatatgtaaatagttaaaagcttttgaaaattttaattattaatgtggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tataccttgatatatgtaaatagttaaaagcttttgaaaattttaattattaatgtggga 316

                                                                       
Query: 181 actaattttgcatttatattttaatctgcatatactgtataatcactatatataatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 actaattttgcatttatattttaatctgcatatactgtataatcactatatataatatat 256

                                                                       
Query: 241 acagccaatttaagtttacaaggaaattgagcagagaattaaaatgttcacttttgccgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acagccaatttaagtttacaaggaaattgagcagagaattaaaatgttcacttttgccgg 196

                                                                       
Query: 301 gtgtggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcggatttctga 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtgtggtggcacacgcctttaatcccagcactcgggaggcagaggcaggcggatttctga 136

                                                                       
Query: 361 gttcgaggccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 gttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaa 76

                                                      
Query: 421 ccctgtcttgaaaaaaaaaatgttcacttttatttccctgtac 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  ccctgtcttgaaaaaaaaaatgttcacttttatttccctgtac 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_k17.g1 MSMg01no383_k17.g1 CHROMAT_FILE:
MSMg01no383_k17.g1 PHD_FILE: MSMg01no383_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:46 2005
         (442 letters)



>mm_chr2_120460153_120460994
          Length = 842

 Score =  855 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagctgtcctcagacacaccagaagaggccatcagatcccattacagatgtttgtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagctgtcctcagacacaccagaagaggccatcagatcccattacagatgtttgtgag 260

                                                                       
Query: 61  ccaccatgtggttgcctggaattgaactcaggacctctggaagagcagtcactgctctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaccatgtggttgcctggaattgaactcaggacctctggaagagcagtcactgctctta 320

                                                                       
Query: 121 accgctgagccacctctccagcccagtgactgttatttatgatctatagagatggtagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accgctgagccacctctccagcccagtgactgttatttatgatctatagagatggtagtg 380

                                                                       
Query: 181 agtggcatcatttttttgaaaaatgattcaaaaaggtgggaaaagactgcttggtcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggcatcatttttttgaaaaatgattcaaaaaggtgggaaaagactgcttggtcaagg 440

                                                                       
Query: 241 agtaggagcttcggtaatgtccatttccaatttgggcctcagtgtgcttcacgtggggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaggagcttcggtaatgtccatttccaatttgggcctcagtgtgcttcacgtggggtg 500

                                                                       
Query: 301 caatgcagttagtcttctgctgcacggccttgaactgtgtgcagcaggactggagaatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatgcagttagtcttctgctgcacggccttgaactgtgtgcagcaggactggagaatcc 560

                                                                       
Query: 361 tagaggctaatctgtccttatgaccttaagtgtgtacttgtgctcctacacagattctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaggctaatctgtccttatgaccttaagtgtgtacttgtgctcctacacagattctga 620

                                 
Query: 421 aagggatagataggtaggctgt 442
           ||||||||||||||||||||||
Sbjct: 621 aagggatagataggtaggctgt 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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