Query= MSMg01no383_l10.b1 MSMg01no383_l10.b1 CHROMAT_FILE:
MSMg01no383_l10.b1 PHD_FILE: MSMg01no383_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:49 2005
(457 letters)
>mm_chr2_126245588_126246444
Length = 857
Score = 828 bits (428), Expect = 0.0
Identities = 446/454 (98%), Gaps = 6/454 (1%)
Strand = Plus / Minus
Query: 7 ggaattcatgcttggt-gttataaacttggctaaaagctagggaggtcattggctgtaga 65
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 721 ggaattcatgcttggtag-tataaacttggctaaaagctagggaggtcattggctgtaca 663
Query: 66 gtgactcagccactgaagctttggtaaattggacatgtagttaaaccaccttctgcagtg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtgactcagccactgaagctttggtaaattggacatgtagttaaaccaccttctgcagtg 603
Query: 126 ggcgactgtcaaaattgagatttggaacagatatttaccagtttatgtccattcattctt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggcgactgtcaaaattgagatttggaacagatatttaccagtttatgtccattcattctt 543
Query: 186 ttgttcatttatttgcttggcaaatgtatatttcatacaatgctaaagagtctgtgggct 245
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttgttcatttatttgtttggcaaatgtatatttcatacaatgctaaagagtctgtgggct 483
Query: 246 cgtcccaaagaggcctttaattaggtgattgctaatgtactcaggcccggaacatgatgt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cgtcccaaagaggcctttaattaggtgattgctaatgtactcaggcccggaacatgatgt 423
Query: 306 tgatataggaacaagcactcactgtatattataagttatcttttcaaatacatgcagcct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgatataggaacaagcactcactgtatattataagttatcttttcaaatacatgcagcct 363
Query: 366 ttgatgcatttgtgagactggcatatgtgtatgtaggcagatatgtgtgtgtgtgtgtgt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgatgcatttgtgagactggcatatgtgtatgtaggcagatatgtgtgtgtgtgtgtgt 303
Query: 426 gtgtgtgtgtgtgtgtgtgtgcg----tgtgtac 455
||||||||||||||||||||||| |||||||
Sbjct: 302 gtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtac 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_l10.g1 MSMg01no383_l10.g1 CHROMAT_FILE:
MSMg01no383_l10.g1 PHD_FILE: MSMg01no383_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:49 2005
(563 letters)
>mm_chr2_126079438_126080401
Length = 964
Score = 982 bits (508), Expect = 0.0
Identities = 547/560 (97%), Gaps = 1/560 (0%)
Strand = Plus / Plus
Query: 1 tcaaaaacatccccataaggctttagcaatatttcaatcattaaataatttcaagtgccc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaaacaaccccataaggctttagcaatatttcaatcattaaataatttcaagtgccc 260
Query: 61 agtaagtctcatacagggtggcataatgttatctattcatttaaacatataatcatttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaagtctcatacagggtggcataatgttatctattcatttaaacatataatcatttac 320
Query: 121 ccattgtaaattactaagtg-cccccatacatacttaccaactgatttaccagttctatt 179
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ccattgtaaattactaagtgccccccatacacacttaccaactgatttaccagttctatt 380
Query: 180 gatagagttttcacttaatgatgttgctgggagttttcctcaccaccaataatcatttta 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagagctttcacttaatgatgttgctgggagttttcctcaccaccaataatcatttta 440
Query: 240 tggacatttcagtcatcttgttgcctgttaaacataatcaagagtttctcttgacgaatc 299
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tggacatttcagtgatcttgttgcctgttaaacatattcaagagtttctcttgacgaatc 500
Query: 300 caaaagaacaggattcccactgtaaagcaggtgtgagcatctagttataagactgtcatc 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 caaaagaacaggattcccactgtaaagcaggtatgagcatctagttataagactgtcatc 560
Query: 360 aggttgtgttccatcgtgtttggacaagttttcattctttacaacaggggatgggagcat 419
|| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 561 agattgtgttccatcgtgtttggacaagttttcactctttacaacaggagatgggagcat 620
Query: 420 gattccacacatctttattctggactacaaggaagacctcatttcaacaaggcaaattat 479
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 621 gattccacacatctttattctggactacaagaaagacctcatttcaataaggcaaattat 680
Query: 480 cccgtttcatctttatgtgaaattggtactataaaaatagtacctgctttgtgttggcac 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccgtttcatctttatgtgaaattggtactataaaaatagtacctgctttgtgttggcac 740
Query: 540 tagacagtatatgggaagaa 559
||||||||||||||||||||
Sbjct: 741 tagacagtatatgggaagaa 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space: 527562
Effective search space used: 527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
