BAC Information

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BAC

Clone NameMSMg01-383M16
Chromosome2 (Build37)
Map Location 147,923,168 - 147,923,666
singlet/doubletsinglet
Overlap genenone
Upstream geneNkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752
Downstream geneSstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383M16.T7 (MSMg01no383_m16.b1)MSMg01-383M16.TJ (MSMg01no383_m16.g1)
ACCAG487379AG487380
length778768
length of high quality
(start - end)		503 (38 - 540)502 (68 - 569)
definitionCHROMAT_FILE: MSMg01no383_m16.b1 PHD_FILE: MSMg01no383_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:56 2005CHROMAT_FILE: MSMg01no383_m16.g1 PHD_FILE: MSMg01no383_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAT
AAAGCCTCAGCATAGTACTGAATTTTCAAATGTTCATGCCTCTACTATGA
GTTTTATGCTTTTGTTGTTTATTAGATATTTCAATCTTTGAGACTCAGTC
ATTCAGATCGCAAATGCTAAGATACACATGTGGCCATTAAAAATTGCTGA
TTTCTTCCCAGGGTCATCATGTAACATTTGAAGACTCTTGGGGGCTTCCC
TTCTACACTGTCTTTGCAAAGCATTTTCTCAATCTCCTCCATTCACAGGA
ATAGTTGCTGAAATCTATTAAGTGGGTCTCTAGCCAGACGTAAGAGATTA
AAATGTGATAATGGATGGGAGGACATTCTCTGAAGGGACAGGATAGAGAA
GCACACTTAAGGAATGGTTCTGACACCTGGCAAGAGGTCATGTGGCCTTT
GCTTCCACAAAGTGTTTCTCAGTGCTCTGTTGTACACTGACTTTTCTTTC
TTTTTCTTTTTTGAGATGTCATTCATTTCACAGAATAATAAGATTAGCAC
TGGCCTAGCCCCACTTCCTAATAGAACAATCACTTGTTGATTGCCTGTAA
TTAGCAACTGCTCCAGGAAACCCTGGGAGCCTGCTTTGCCCCCCCGAGAG
GAAGGGGAGTCTCAGGAACATGGCGGCAGGAAAACCTACCCTAAAAGTTT
CTAAGGGGTTGGAAAAAAGCCCTTCTTCTGAAAAAAAATTTGGGATTTGC
TGTTTTTTTCTACCCCCACCCAAAAGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCCTGGAAACAGAAACACAGGCATTGGGGACC
AGACTCCAACCCCAAGTTTTTTGGGAAGGCGGCCTACCTTGAAGTATGGT
TAATATACTCAGTGGTACTTCATTGGAGAAAACTATTTTCCTTTGCAAGT
CGGTATCAGTTGCAGAGAGCTTCTTAGTAAGGAGTAGACGTCCATGTCCA
ATTCCCCTCTCCGTGCTGGAACCCCATCTGGCTTGAACCTGTACAGGCCT
GGTGCAAGCTGCTACAGTCTCTAAGAGTTCATGTGGTCATCAGTCCCATT
GTGTTGCCTTGGAGTAATCCATTCTCTCTGGCTCTTAGAATCTTCCCATC
TCTTGAGGGGTGTTCTTCAACCATTTAGGACCCATCAGAGAAGCTTAACA
TTATTCCACACCACTTATGTTCAATGTCTGTAGAGATAAAAAGAGTGTCA
AATCGTCTTGGAACTGGAGTTACAGATAGTTGTGAGCTACCATGCAGGTG
CTGGGAATAAACTCTAGGTCCACTCTGCAAGAGCAGCCAGTGCTCTCTAC
CACTGAGCCATCTCTCTANGCCTTTATCCAATTTTTCTTGTGTCCAAAGA
ATTTTGCAATGTAAAGTTGGGAGAGGGGATTATAAAAAAGTTTTACCTTT
TTCCGGATCAAAAAATCCTCCCCCTTGGAGTTCAAGGCCGGAAACACCTG
GTTTAAAAAATATATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_m16.b1 MSMg01no383_m16.b1 CHROMAT_FILE:
MSMg01no383_m16.b1 PHD_FILE: MSMg01no383_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:56 2005
         (503 letters)



>mm_chr2_147922964_147923866
          Length = 903

 Score =  949 bits (491), Expect = 0.0
 Identities = 497/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctataaagcctcagcatagtactgaattttcaaatgttcatgcctctactatgag 64
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 703 gaattctataaagccgcagcatagtactgaattttcaaatgtccatgcctctactatgag 644

                                                                       
Query: 65  ttttatgcttttgttgtttattagatatttcaatctttgagactcagtcattcagatcgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttttatgcttttgttgtttattagatatttcaatctttgagactcagtcattcagatcgc 584

                                                                       
Query: 125 aaatgctaagatacacatgtggccattaaaaattgctgatttcttcccagggtcatcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aaatgctaagatacacatgtggccattaaaaattgctgatttcttcccagggtcatcatg 524

                                                                       
Query: 185 taacatttgaagactcttgggggcttcccttctacactgtctttgcaaagcattttctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 taacatttgaagactcttgggggcttcccttctacactgtctttgcaaagcattttctca 464

                                                                       
Query: 245 atctcctccattcacaggaatagttgctgaaatctattaagtgggtctctagccagacgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atctcctccattcacaggaatagttgctgaaatctattaagtgggtctctagccagacgt 404

                                                                       
Query: 305 aagagattaaaatgtgataatggatgggaggacattctctgaagggacaggatagagaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aagagattaaaatgtgataatggatgggaggacattctctgaagggacaggatagagaag 344

                                                                       
Query: 365 cacacttaaggaatggttctgacacctggcaagaggtcatgtggcctttgcttccacaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cacacttaaggaatggttctgacacctggcaagaggtcatgtggcctttgcttccacaaa 284

                                                                       
Query: 425 gtgtttctcagtgctctgttgtacactgacttttctttctttttcttttttgagatgtca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgtttctcagtgctctgttgtacactgacttttctttctttttcttttttgagatgtca 224

                              
Query: 485 ttcatttcacagaataata 503
           |||||||||||||||||||
Sbjct: 223 ttcatttcacagaataata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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