BAC Information

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BAC

Clone NameMSMg01-383P23
Chromosome2 (Build37)
Map Location 11,601,335 - 11,601,776
singlet/doubletsinglet
Overlap geneIl2ra
Upstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17
Downstream geneIl15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383P23.T7 (MSMg01no383_p23.b1)MSMg01-383P23.TJ (MSMg01no383_p23.g1)
ACCAG487537AG487538
length749743
length of high quality
(start - end)
445 (47 - 491)516 (75 - 590)
definitionCHROMAT_FILE: MSMg01no383_p23.b1 PHD_FILE: MSMg01no383_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:11 2005CHROMAT_FILE: MSMg01no383_p23.g1 PHD_FILE: MSMg01no383_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGGCTTACTCTTGGGAGCAAGGATAGTTCAAATTCAGCTGCT
TCATCAGAAACCCCACCCCAGCTTGGATAAAAACCCTTGAAAGCTGGTTT
GCTGGAGGTCCCAGGGGGACTGGCGGACAGCCCCAACAGTTTGAGTCTCC
TTCTCTCCCGTCATTGTAACTGCTTATGTAACAGTAAGAGAAGAGGGGCG
GTGAGCTGCAGGAGCATCCTGTCATCTGTGGGGTTTGTTTATTTTATTTT
TCTGAGTCTTAAAGAGCCCCTCTCCAATTCAGGAAATAGCTGTGCATCCC
TGGGTTCCATGCCTTCCTACAATGCCTACATTTCTGACAGCTGGAATCTA
TCAACACTTGTAGGTTCAGTGAAAGCAAAACAAGTAAATAAGAACCGATG
TCCAGTTTTAGCCACCAGAGTTGTTCTGGGTGCAAGAAGTAACCTAGAGG
CATTTGCTGTGCCTTCCCAAACTTGCCTTCAAAATTCTCTTCCTCGTCCA
GGTCACTGCAGGGAGCCCCCTCCCTGGAAACTGAAGATCCCAGAGAATCT
ATCATTTCCTGGAAGGACGAAAAGTCCCCAACGAGGGTGTTCCCGAAAAA
AGGGTCTACAAAAAAGCCCGGTATTAACTCCGCCAAATAAACTGGGGGAA
AAAGAGGGGCCCCCCCCCCCTTCCATGTGGAAAGGACAAAAAACACCCC
NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTTAGACCGATAACTCACTTTTTC
ATTAGGTTGTTTTTTGGTGGTTAGCTTCTTGAGTGTCTTTATATATTTTG
AATATTAGCCTTCTCCAAATGATATAAATAATCAACAAAACCAAAACCTG
GTTCTTTAAGAAAATCAACAAGATAGAAAAATGTGTAGCCAAACTAACCA
AAGGGTCCAGAGACAGTATCCAAATTATCAAAATCAGAAAAGAAAATGGA
GATATAACAACAGAAACTGAGGATATTCAAATAATCATCAGATCATACTG
CAAAAGCCAACACTCAACAAAACTGGAAAATCTAAGTGATATGGATGATT
TTTCTAAACAGACACCACATATCAAAGTTAAATCAAGAGCAGGTAAACTA
TCTAAACAGGACCATATCCCCTAAGGAAATAGAGGAAGTTATTTTAAAAA
ACAACAACAACAACAACAACAACAACAACAAAAAACCTTCCCAACCAAAA
ATAGCCTAGGGACAGGGAATTTCAGTGGAGAATTCTATCAGACCTTCAAA
GAAGAGCTAGTGCCAATATTTCCTCANACTATTTCTTAAAATAGAGACCG
AAGGAATACTACCCAATTCTTTCTATGGAGCCACAATTACTCTGATACCT
ACCCCACACCAGNACCCCAGCAAAAAAGAGAACTTCTAACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_p23.b1 MSMg01no383_p23.b1 CHROMAT_FILE:
MSMg01no383_p23.b1 PHD_FILE: MSMg01no383_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:11 2005
         (445 letters)



>mm_chr2_11601132_11601976
          Length = 845

 Score =  816 bits (422), Expect = 0.0
 Identities = 437/442 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcactgggcttactcttgggagcaaggatagttcaaattcagctgcttcatcagaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcactgggcttactcttgggagcaaggatagttcaaattcagctgcttcatcagaa 263

                                                                       
Query: 64  accccaccccagcttggataaaaacccttgaaagctggtttgctggaggtcccaggggga 123
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 264 accccaccccagcttggataaaaaccctcgtaagctggtttgctggaggtcccaggggga 323

                                                                       
Query: 124 ctggcggacagccccaacagtttgagtctccttctctcccgtcattgtaactgcttatgt 183
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccggcggacagccccaacagtttgagtctccttctctcccgtcattgtaactgcttatgt 383

                                                                       
Query: 184 aacagtaagagaagaggggcggtgagctgcaggagcatcctgtcatctgtggggtttgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacagtaagagaagaggggcggtgagctgcaggagcatcctgtcatctgtggggtttgtt 443

                                                                       
Query: 244 tattttatttttctgagtcttaaagagcccctctccaattcaggaaatagctgtgcatcc 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 444 tattttatttttctgagtcttaaagagccgctctccaattcaggaaatagctgcgcatcc 503

                                                                       
Query: 304 ctgggttccatgccttcctacaatgcctacatttctgacagctggaatctatcaacactt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgggttccatgccttcctacaatgcctacatttctgacagctggaatctatcaacactt 563

                                                                       
Query: 364 gtaggttcagtgaaagcaaaacaagtaaataagaaccgatgtccagttttagccaccaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtaggttcagtgaaagcaaaacaagtaaataagaaccgatgtccagttttagccaccaga 623

                                 
Query: 424 gttgttctgggtgcaagaagta 445
           ||||||||||||||||||||||
Sbjct: 624 gttgttctgggtgcaagaagta 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)