BAC Information

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BAC

Clone NameMSMg01-384G23
Chromosome2 (Build37)
Map Location 166,620,637 - 166,621,109
singlet/doubletsinglet
Overlap geneTrp53rk
Upstream genePrkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047
Downstream geneArfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384G23.T7 (MSMg01no384_g23.b1)MSMg01-384G23.TJ (MSMg01no384_g23.g1)
ACCAG487872AG487873
length759775
length of high quality
(start - end)		459 (36 - 494)---
definitionCHROMAT_FILE: MSMg01no384_g23.b1 PHD_FILE: MSMg01no384_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:44 2005CHROMAT_FILE: MSMg01no384_g23.g1 PHD_FILE: MSMg01no384_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTC
CTCATCTGGCTTGAGAAAGGAGGAGCAAGCCTTGATACTTCCAGACTTAC
CCTGGCCTGGTCTCAGGCCGTAGTCCTACAGGGCTTTAACAGGGCAAGCT
CTGGATAAATTGTATCATTTTCCACAGTAGTCTAAACCCTGTTCCAAAGC
TGTCTGCCTGTGCATGAAGCTGGCCTTCATGAAGATGCGCTCCCTAACCA
TGTGTGTCCATTGCAGGGATAGCTGCCCCAGTCGTCTTCTTTGTGGACTA
TGCGTCTAACTGCTTATATATGGAAGAAATCGAAGACTCGGTGACTGTTC
GGGATTATATCCAATCCACTATGGAGACTGAAAAGGACCCCCAGTGCCTC
TTGGACCTGGCCAGGAGGATGGGGCAGGTTCTGGCCGGAATGCACGACCA
AGACCTCATTCACGGGGACCTCACCACCTCCAACATGCTCCTGAGGCGGN
CCCTGGCGCAGCTGCACATCGTGCTCATCGACTTTGGGGCTGAGCTTTGT
CTCANGACTGCCGGAGGATAAAAGNGTCGACCTCCATGGTCTTGGAAAAG
AGCTTCTCAATACGGACCCCCCCACGAAACCGCGGTTGGAGACCTTTTTA
AAAAAAAACAGGGTCCTCGCCCCAAAAAACCAGTCCACTGGTGAATAAAT
TAAAAAAATATGGCTCTCGAAATGCCAAAAAGGTCCTTTGCCTCCCTTCG
AATCTTGTG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATTATGTAGATCAGGCTAGCCTGAAACTCAGAGATCT
ACCTGCCACTGCTACAAGTGGGGATAAAAATTTAAATCCCGAGGGGGGTG
AGGGGAAGAGAGGGGGAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTTTTNTTTTTTTNTTTTNTTTTTTTTTTTTTTTTTTTCT
CCCTNTTTNTCCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCTCCCCC
CCCCCCCCCCCCCCCCTCCCCCTCCCCCCCCCCCCCTCCCCCCCCCCTCC
CCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTCCCCCCCCCCCCCTCCCTC
CCCCCCCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCC
CCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCTCC
CCCCCCTCCCCCCCCCCCCNCTCCCCCCCCCCTCCCCCCCCCCTNCCCCC
CCCCCCCCTCCCCCCCCCTCCCCCCCCCNCTCCCCNNTTNNTCCCCCCCT
CCCCCCTCTCTCCCCCCCCCCCCCCCCCCTCCTCCCCCCCCCCCCCCTCC
CCCCCCCCCCCCCCCCCCCCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_g23.b1 MSMg01no384_g23.b1 CHROMAT_FILE:
MSMg01no384_g23.b1 PHD_FILE: MSMg01no384_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:44 2005
         (459 letters)



>mm_chr2_166620451_166621309
          Length = 859

 Score =  803 bits (415), Expect = 0.0
 Identities = 450/473 (95%), Gaps = 18/473 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtcctcatctggcttgagaaaggaggagcaagccttgatacttccagactta 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaattccagtcctcaggtggcttgagaaaggaggagcaagccttgatacttccagactta 246

                                                                       
Query: 65  ccctggcctggtctcaggccgtagtcctacagggctttaacagggcaagctctggataaa 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 247 ccctggcctggtctcaggccgtagtcctgcagggctttaacagggcaagctctggataaa 306

                                                                       
Query: 125 ttgtatcattttccacagtagtctaaaccctgttccaaag------------------ct 166
           ||||||||||||||||||||||||||||||||||||||||                  ||
Sbjct: 307 ttgtatcattttccacagtagtctaaaccctgttccaaagcaggtttaggctgagaaact 366

                                                                       
Query: 167 gtctgcctgtgcatgaagctggccttcatgaagatgcgctccctaaccatgtgtgtccat 226
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 367 gtctgcctgtgcatgaagccggccttcatgaagatgcgctccctaaccacgtgtgtccat 426

                                                                       
Query: 227 tgcagggatagctgccccagtcgtcttctttgtggactatgcgtctaactgcttatatat 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgcagggatagctgccccagtcgtcttctttgtggactatgcgtctaactgcttatatat 486

                                                                       
Query: 287 ggaagaaatcgaagactcggtgactgttcgggattatatccaatccactatggagactga 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggaagaaatcgaagactcggtgactgttcgggattatatccaatccactatggagactga 546

                                                                       
Query: 347 aaaggacccccagtgcctcttggacctggccaggaggatggggcaggttctggccggaat 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaaggacccccagtgcctcttggacctggccaggaggatggggcaggttctggccggaat 606

                                                                
Query: 407 gcacgaccaagacctcattcacggggacctcaccacctccaacatgctcctga 459
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcacgaccaagacctcattcacggggacctcaccacctccaacatgctcctga 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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