BAC Information

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BAC

Clone NameMSMg01-384J04
Chromosome2 (Build37)
Map Location 77,215,269 - 77,360,919
singlet/doubletdoublet
Overlap geneZfp533
Upstream geneDrbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
Downstream geneBC003993, LOC667920, OTTMUSG00000016703, LOC383717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384J04.T7 (MSMg01no384_j04.b1)MSMg01-384J04.TJ (MSMg01no384_j04.g1)
ACCAG487977AG487978
length750755
length of high quality
(start - end)		498 (34 - 531)554 (63 - 616)
definitionCHROMAT_FILE: MSMg01no384_j04.b1 PHD_FILE: MSMg01no384_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:54 2005CHROMAT_FILE: MSMg01no384_j04.g1 PHD_FILE: MSMg01no384_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,215,269 - 77,215,761)(77,360,366 - 77,360,919)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTTGA
GGGTCCTATCTTACACCACTTTTTTTTCTCCCAGGGGTGAAAAACTAAAC
CAAAATAGAGCATCTATTTCTGCCTCGCATGTGCTTCAGAGGTGATGCTC
ACACCCCCTTCTAGCTGCTCTTTCCAAGGCTTCCGCTCACATTCTCACGC
ACAGGCAGCGGCAGACCTCAGGAGACTTAGTAAGATTAATAGCTAGGAAG
ATCGCCACAACACTTTTTATGGATCTTCTCCCCTCTCTACTTCCTTGCCT
AAACTCTTGAGCCCTACAAACCCCTAATCCCATCTTCATAACTCAGGAGA
CTATTGGCCTCTTCCTGCGTTGGTCCCTTCTGCATGGCCTCCTGAGAAGG
TTTTCTAGACAGTGAACTCTGCATGAGTTGAACTTACCCTATTGAGTCTC
TCTCCTTGGTGCCTGCTAACCTGTGCTAACCTCAAAACAATTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNTTANNNNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTGTTTTTTTTTTTTTTTTTTTTTTTTCATTA
TTTTTTATATTTTTTTTAATAAAATAANAATTTATATCAATATTAAATTA
TTTAATATTTTAATATTTTTATAATATTTCTTTTATTTTTGTATTTAAAA
AAAACATCTTCACATATATATCTTTCTTACTCTCAACTTTTTTAATTTGT


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGAGTAAAAATAAAAAAGATAATTTCTGATTTCCAAAA
ATTAGAATATATTAAAATTTTTTAGGGTTTTGTGAATTCATACCAATTAT
AAATTGATTTTTTTTTAACAAGATCATGTTCCATTCACAAAAAGTAAGCA
CTTTTTCACACACAGAAAAACAAACTCTGGTTATGGCTCTCTGAGTATGT
CTTCACATATAACAAAGATCATGCTTCAGGCTTTCAAAGGAAGAGAGGCC
ATACCCAGAGTACACTGCCTCCATTTCAAGTCCTTTGTGGTCATGTTGCC
ATAGAGATGTTGTTGCTAGCACACTGTTGTACTGAATGCAGTTGCCCAAG
AGTTAACAAAGTTCCTGGGGTCTATCCAGGAACTCAGTACTCACCTGTGA
CCTCATGTTCAAGGAAAATGCTTCTGAGAACTGGAATGTTGGACTTTGAC
TGCAGGGCTGGAGATAACAGCGCTGATGTAGCGTGTTTGCACGGCCCCAG
GGAACGCCTTGATCAGTCTTCAGTATCAAATAAACTGGTGTGGTGGGACA
AGTCTATAATCCCAGGACTCAGGAGATGGAAGTAGGCGAATCACAAGTTC
AAGATAATCAATTCTCAACTATCTAGTGAGTTAGAAACCAGCCTGGAATA
TAAAACCCTGTCTCAAAAGGAAGAACAACAGAATGGGTCCCATTTTGTTA
CGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_j04.b1 MSMg01no384_j04.b1 CHROMAT_FILE:
MSMg01no384_j04.b1 PHD_FILE: MSMg01no384_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:54 2005
         (498 letters)



>mm_chr2_77215065_77215962
          Length = 898

 Score =  938 bits (485), Expect = 0.0
 Identities = 491/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacttgagggtcctatcttacaccacttttttttctcccaggggtgaaaaacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacttgagggtcctatcttacaccacttttttttctcccaggggtgaaaaacta 264

                                                                       
Query: 65  aaccaaaatagagcatctatttctgcctcgcatgtgcttcagaggtgatgctcacacccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaccaaaatagagcatctatttctgcctcgcatgtgcttcagaggtgatgctcacacccc 324

                                                                       
Query: 125 cttctagctgctctttccaaggcttccgctcacattctcacgcacaggcagcggcagacc 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttctagctgctctttccaaagcttccgctcacattctcacgcacaggcagcggcagacc 384

                                                                       
Query: 185 tcaggagacttagtaagattaatagctaggaagatcgccacaacactttttatggatctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaggagacttagtaagattaatagctaggaagatcgccacaacactttttatggatctt 444

                                                                       
Query: 245 ctcccctctctacttccttgcctaaactcttgagccctacaaacccctaatcccatcttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcccctctctacttccttgcctaaactcttgagccctacaaacccctaatcccatcttc 504

                                                                       
Query: 305 ataactcaggagactattggcctcttcctgcgttggtcccttctgcatggcctcctgaga 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 ataactcaggagactattggcctcttcctgtgttggtcccttctgcatggcctcctgaga 564

                                                                       
Query: 365 aggttttctagacagtgaactctgcatgagttgaacttaccctattgagtctctctcctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggttttctagacagtgaactctgcatgagttgaacttaccctattgagtctctctcctt 624

                                                                       
Query: 425 ggtgcctgctaacctgtgctaacctcaaaacaattgtgtgtgtgtgtgtgtgtgtgtgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtgcctgctaacctgtgctaacctcaaaacaattgtgtgtgtgtgtgtgtgtgtgtgtg 684

                        
Query: 485 tgtgtgtgtgtgt 497
           |||||||||||||
Sbjct: 685 tgtgtgtgtgtgt 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_j04.g1 MSMg01no384_j04.g1 CHROMAT_FILE:
MSMg01no384_j04.g1 PHD_FILE: MSMg01no384_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:54 2005
         (554 letters)



>mm_chr2_77360216_77361169
          Length = 954

 Score = 1017 bits (526), Expect = 0.0
 Identities = 547/554 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagtaaaaataaaaaagataatttctgatttccaaaaattagaatatattaaaattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgagtaaaaataaaaaagataatttctgatttccaaaaattagaatatattaaaattttt 645

                                                                       
Query: 61  tagggttttgtgaattcataccaattataaattgatttttttttaacaagatcatgttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 644 tagggttttgtgaattcataccaattataaattgatttttttttagcaagttcatgttcc 585

                                                                       
Query: 121 attcacaaaaagtaagcactttttcacacacagaaaaacaaactctggttatggctctct 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 584 attcacaaaaagtaagcactttttcacacacagaaaaataaactctggttatggctctct 525

                                                                       
Query: 181 gagtatgtcttcacatataacaaagatcatgcttcaggctttcaaaggaagagaggccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gagtatgtcttcacatataacaaagatcatgcttcaggctttcaaaggaagagaggccat 465

                                                                       
Query: 241 acccagagtacactgcctccatttcaagtcctttgtggtcatgttgccatagagatgttg 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acccagagtatgctgcctccatttcaagtcctttgtggtcatgttgccatagagatgttg 405

                                                                       
Query: 301 ttgctagcacactgttgtactgaatgcagttgcccaagagttaacaaagttcctggggtc 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 404 ttgctagcacactgttgtactgaatgcagctgcccaagagttaacaaagttcctggggtc 345

                                                                       
Query: 361 tatccaggaactcagtactcacctgtgacctcatgttcaaggaaaatgcttctgagaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tatccaggaactcagtactcacctgtgacctcatgttcaaggaaaatgcttctgagaact 285

                                                                       
Query: 421 ggaatgttggactttgactgcagggctggagataacagcgctgatgtagcgtgtttgcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggaatgttggactttgactgcagggctggagataacagcgctgatgtagcgtgtttgcac 225

                                                                       
Query: 481 ggccccagggaacgccttgatcagtcttcagtatcaaataaactggtgtggtgggacaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ggccccagggaacgccttgatcagtcttcagtatcaaataaactggtgtggtgggacaag 165

                         
Query: 541 tctataatcccagg 554
           |||||||| |||||
Sbjct: 164 tctataattccagg 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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