XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TGAAACTCCACTGCTGATCCTGGGGCCAGATCCAGGAGCCCCTGCCCTGC
TCTCCATACCTAACGGGAGCTAGGGAAGAGGGGGCCACAGGAAAGCAGTT
GACCAATAGGGATGACCCTGAACATAGTACGCCCACTGCGCCCCACACCT
TCTTCTGTCTCTATGGAGGAATACACAGGGGTAGAGACTGCCAAACTCAG
GTCCACAAGGGCTCAGAGGCGGGTAGTAGACTCTAAAGCATGGCTGGCCT
GCCCCAGCCATGATAAGCCAGGCTTCTTCTGGGTTCCTGCAGTATTTTTC
TCAACGTGCTGGACTAGCTTCCTTTCCAGGGTCCTGCTGTCCAGAAGCAA
GCCCAGCTCACCCTCTAGTGGCAGGCTGCTGTACACACACATGTACACTA
CATACATGAACAGAGACCTACAGGTCTGTACACACATATGAATATATAGA
TATACATGCACACAGGTGTACATACATTCTAACAGGCATTCGTGTGCACA
CATTCACATGCACGCACATGTGTTCATATATAAACATACATTANAGAGAT
GGATACTGAGTAGATGGAGGTATGCACGGGTGGGTGGAGGGATGCATGTG
TTGGTGGAAGGAGNATTGGTTTAAATAAAGGTTTTTTTTATAAAATTATT
ATTTTTGGATTGTTTAATGCGTTTTATAAAG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACTACAGGTGAGGGTGGGAGATTCCGACAA
AGACTTGTTCCCTTGGAGTCTTCTCAGTCCCATGGCCATTGGGTATCCTA
GGCTCAGGGTCCGGGGCTCCTGCCTCTGTTTCTTCACATGGTGTTTCAGG
CATGGCCCTCCTTACTGGGGTCTCACCCTTCGCCTACCCAGCTCACTGGC
ACAGAAGTCCCGCCTGGGCCCCTCTCTACCCACCTAATATCAAGACTCTG
GACATCAAGAAGATTCTGCTTAAGGGCTGAAGGGGTATCTCAGTAATTGC
TTGCCTACATGCTGAAGGTGACTTTGAACTTCTGCCTCCACATCCCAAAT
TCTGGGACTACAGGTGTGTGTCACCAGGCTGAGTTTATGTGATACTTGGC
TAGCACCCAACTGAGTACATGACCAGACCCTCATGAATTCTTTAGCAGAA
TAGTGCATGTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGCACTCACATGT
GCATGTGTGTGCATGTGTGCATGTTCCTGCTTCAGGACACATCCATACCA
TGGGATACATGGAAATCAGAGAACAACCTCAGGCGTCAGTCCGTCTTTCC
CCATGTTTGAAGGTAGGCCTCCCTTGTTTGCTGCTGAAATATGTATTTCC
CCTTTGCCTACCAAATN

Query= MSMg01no384_j07.b1 MSMg01no384_j07.b1 CHROMAT_FILE:
MSMg01no384_j07.b1 PHD_FILE: MSMg01no384_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:54 2005
         (547 letters)



>mm_chr2_179607077_179608027
          Length = 951

 Score =  996 bits (515), Expect = 0.0
 Identities = 538/547 (98%), Gaps = 4/547 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgaaactccactgctgatcctggggccagatccaggagcccctgccctgctc 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgcaactccactgctgatcctggggccagatccaggagcccctgccctgctc 264

                                                                       
Query: 65  tccatacctaacgggagctagggaagagggggccacaggaaagcagttgaccaataggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 tccatacctaacgggagctagggaagagggggccacaggaaagcagttgaccaatagggg 324

                                                                       
Query: 125 tgaccctgaacatagtacgcccactgcgccccacaccttcttctgtctctatgga-gga- 182
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| 
Sbjct: 325 tgaccctgaacatagtacgcccactgtgccccacaccttcttctgtctctatggagggat 384

                                                                       
Query: 183 --atacacaggggtagagactgccaaactcaggtccacaagggctcagaggcgggtagta 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggatacacaggggtagagactgccaaactcaggtccacaagggctcagaggcgggtagta 444

                                                                       
Query: 241 gactctaaagcatggctggcctgccccagccatgataagccaggcttcttctgggttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gactctaaagcatggctggcctgccccagccatgataagccaggcttcttctgggttcct 504

                                                                       
Query: 301 gcagtatttttctcaacgtgctggactagcttcctttccagggtcctgctgtccagaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagtatttttctcaacgtgctggactagcttcctttccagggtcctgctgtccagaagc 564

                                                                       
Query: 361 aagcccagctcaccctctagtggcaggctgctgtacacacacatgtacactacatacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagcccagctcaccctctagtggcaggctgctgtacacacacatgtacactacatacatg 624

                                                                       
Query: 421 aacagagacctacaggtctgtacacacatatgaatatatagatatacatgcacacaggtg 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacagagacctacaggtatgtacacacatatgaatatatagatatacatgcacacaggtg 684

                                                                       
Query: 481 tacatacattctaacaggcattcgtgtgcacacattcacatgcacgcacatgtgttcata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 685 tacatacattctaacaggcattcgtgtgcacacattcacatgcacgcacatgtgttcgta 744

                  
Query: 541 tataaac 547
           |||||||
Sbjct: 745 tataaac 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 951
Length adjustment: 10
Effective length of query: 537
Effective length of database: 941
Effective search space:   505317
Effective search space used:   505317
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)