Query= MSMg01no384_k11.b1 MSMg01no384_k11.b1 CHROMAT_FILE:
MSMg01no384_k11.b1 PHD_FILE: MSMg01no384_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:00 2005
(446 letters)
>mm_chr2_104116097_104116941
Length = 845
Score = 644 bits (333), Expect = 0.0
Identities = 410/451 (90%), Gaps = 28/451 (6%)
Strand = Plus / Minus
Query: 1 ggctgcagtgggaagatcatgaatttatccaccctgggctccatagtgataactttgtct 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggctgcagcaggaagatcatgaatttatccaccctgggctccatagtgataactttgtct 681
Query: 61 caagagtacaatgctgtggtttgaatgtgataggtct---tcgccaccgtgtgtgtctga 117
||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 680 caagagtacaatgctgtggtttgaatgtgataggtctctgtcg---ctgtgtgtgtctga 624
Query: 118 acacttggtctctagctggggtactgttgggtaagactgtggagcctcactggagaaagt 177
|||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct: 623 acacttggtctctaactggggtgctgttgggtaagattgtggagcctcaccagagaaagt 564
Query: 178 ggatccatgggttaccagtgccctaggtacccactgcataga--gacagtgttgaaacct 235
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 563 ggatccatgggttaccagtgccctaggtacccactgcatagagtg---gtgttgaaacct 507
Query: 236 caggaaaagaggcttatttatagaactgataaacaaacttagtgtgatagctgttgggat 295
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 506 caggaaaagaggcttatttatagaactgataaacaagcttagtgtgatagctgttgggat 447
Query: 296 cgctaactaaagtgtaattccatggctttggggaataatatacagcccctctccgtggaa 355
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 446 cgataactaaagtgtaattccgtggctttggggaataatatacagcccctctccgt---- 391
Query: 356 caatgctttccgagggttaaagtgaagaaaagaacgtggacggagttggatgtgcaatgt 415
||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 390 -------------gggttaaagtgaagaaaagaatgtggacagagttggatgtgcaatgt 344
Query: 416 gctcacagtctgggttgtgaaccacagcctt 446
|||||||||||||||||||||||||||||||
Sbjct: 343 gctcacagtctgggttgtgaaccacagcctt 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 845
Length adjustment: 10
Effective length of query: 436
Effective length of database: 835
Effective search space: 364060
Effective search space used: 364060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_k11.g1 MSMg01no384_k11.g1 CHROMAT_FILE:
MSMg01no384_k11.g1 PHD_FILE: MSMg01no384_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:00 2005
(208 letters)
>mm_chr2_103956619_103957228
Length = 610
Score = 356 bits (184), Expect = e-103
Identities = 203/210 (96%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 1 atttaaacagaaaaggaatgcttaaaatgttgcgggtgtctgttttgtgggccagaggca 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atttaaacagaaaaggaatgtttaaaatgttgcgggtgtctgttttgtgggctagaggca 260
Query: 61 tccaagagtccaaaaagctaagatccgtgctgctccaga--tctgtctccagatccagac 118
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tccaaaagtccaaaaagctaagatccgtgctgctccagaagtctgtctccagatccagac 320
Query: 119 tccagcataaaactgtgggagccgcaccgagtctcagagcacaatggcaagagttcactg 178
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagcataaaactgtgggagccgcaccgagtctcagagcacaatggcaagagttcactg 380
Query: 179 ggggaagggtagagtggtgtgctt-ttttt 207
|||||||||||||||||||||||| |||||
Sbjct: 381 ggggaagggtagagtggtgtgcttgttttt 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 610
Length adjustment: 9
Effective length of query: 199
Effective length of database: 601
Effective search space: 119599
Effective search space used: 119599
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
