BAC Information

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BAC

Clone NameMSMg01-384N08
Chromosome2 (Build37)
Map Location 115,566,606 - 115,745,408
singlet/doubletdoublet
Overlap geneBC052040, Mrg1
Upstream geneLOC100043222, LOC100043232, LOC100043236
Downstream geneG630016G05Rik, 2810405F15Rik, LOC433464, Tmco5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384N08.T7 (MSMg01no384_n08.b1)MSMg01-384N08.TJ (MSMg01no384_n08.g1)
ACCAG488176AG488177
length751748
length of high quality
(start - end)
409 (37 - 445)496 (67 - 562)
definitionCHROMAT_FILE: MSMg01no384_n08.b1 PHD_FILE: MSMg01no384_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:13 2005CHROMAT_FILE: MSMg01no384_n08.g1 PHD_FILE: MSMg01no384_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,566,606 - 115,567,010)(115,744,913 - 115,745,408)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAG
AAAAGCTTGTCGGGGCATGGAGAAATTGTTCAGTGGTTAAAAGCACTCAC
TGGTTGTCCTTGAGGACCTGGGTTCAATTCCCAGCATCCACATGGTGGCT
CACAGACATGTGTTCAGCTCCAGGATGTTCTACTCCCTCTTCTGATATCT
GCAGGCCCCAGGTATGCATGTGGTCCACATACATACATGCAGGCAAAACA
CCCATACGCATAAGAATAAACAAAATCTTTTAAATTCTTTACATAATTGG
TTGTAGAACATGTTCATACCTTGTGGAGAGAAAGCAGTGTTCTGCGCACC
CAGGAATATGACTCTGAATACCAAATACCAAGTTACCAAGCCTGGCTTGG
ATGGATTGGAAGCCCTCTACCATCCTTCTGTATAAATTTCTAGAGTTGTT
GGATTTATCCCAAGAAGGCTTTCCTCTGTTGTTCCTCACTGCTGTTAGAA
AGCTCTGAACAGATAGATCTCCAGAGATGTGACGTCCCAGAGGGAAAAAG
GGAAAGACCTACCCTGCGAGGCCAGTGAAAAACATGGGGAACGGCTTATG
GGCTTGGTTAATCTGGTCGTGGCAAAAAATGAAAATACTTTTTCCCCTGC
TTGCATTGGATTGGGTTTTTCAACAAAATTCCTTTTTTGGTGGCGTATAA
ATATATTTTAGGAAGGCCTTTTTTTTTCATTTCTTTGATTTTGGAATTTT
T
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACAGAGCCCCAAGGCATGTGCAGGAGTTCAGTT
GGTGTGATATTTCGGGTGTCTTGTTTCTCTGTGATTTGGGCCACATTTGC
CGAGGGTGAGGACATGACAGTCTGTCACATGGCACACTTGCCGTAATACG
GGATAAACGCTGACACCTCTGTCTCTACAAAATAATTCCATCTTTCTAAT
TTTCACACTTCCTTCTGAAAAAATTTCTGTAATCCTGCCCTTAGGTCCAA
TTCTTAGCTAATAGCTACCATAACTTTGATAATAAGGTGTGACTCATGAG
GACGGCTCCCCAAGTTCCCCTGAAGCTCTGCCAAGAGTTGAAGACAGGGG
CCCCCTATCCGGGGATTTCAGAAAGGAATCTGAAGGGAATCACTCCCCAC
ACTGGTACATTTTGAACTTGTCCATCCACTGCCTTGACAAAGTCTCCTTT
GAAACGGTGCTGACTCGCCTCTCTCAGGAGGCTTCAGACTCACAGACCTC
AGACGCAGAGAGTGACAGGAAGAATGAACATTCTAAAAGAATGTTCTAGA
CCCCGGAGAATGACTACTCTCAGGGCGGAAAAAAGATTAAAAGTAACCTC
CTGGCGTTGTAAAGATGCCCGGTGATAAAAACAACTTGTCCATCATCTCT
AAGAACCCATTTTTAAGGGCCGAAACCCACGTTTTAGGGTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_n08.b1 MSMg01no384_n08.b1 CHROMAT_FILE:
MSMg01no384_n08.b1 PHD_FILE: MSMg01no384_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:13 2005
         (409 letters)



>mm_chr2_115566402_115567210
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 401/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagaaaagcttgtcggggcatggagaaattgttcagtggttaaaagcactcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaattctcagaaaagcttgtcggggcatggagaaattgttcagtggttaaaagcactcat 264

                                                                       
Query: 65  tggttgtccttgaggacctgggttcaattcccagcatccacatggtggctcacagacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 tggttgtccttgaggacctgggttcaattcccagcatccacatggtggctcacagtcatg 324

                                                                       
Query: 125 tgttcagctccaggatgttctactccctcttctgatatctgcaggccccaggtatgcatg 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttcagctccagggtgttctactccctcttctgatatctgcaggccccaggtatgcatg 384

                                                                       
Query: 185 tggtccacatacatacatgcaggcaaaacacccatacgcataagaataaacaaaatcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtccacatacatacatgcaggcaaaacacccatacgcataagaataaacaaaatcttt 444

                                                                       
Query: 245 taaattctttacataattggttgtagaacatgttcataccttgtggagagaaagcagtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaattctttacataattggttgtagaacatgttcataccttgtggagagaaagcagtgt 504

                                                                       
Query: 305 tctgcgcacccaggaatatgactctgaataccaaataccaagttaccaagcctggcttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctgcgcacccaggaatatgactctgaataccaaataccaagttaccaagcctggcttgg 564

                                                        
Query: 365 atggattggaagccctctaccatccttctgtataaatttctagag 409
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggattgtaagccctctaccatccttctgtataaatttctagag 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no384_n08.g1 MSMg01no384_n08.g1 CHROMAT_FILE:
MSMg01no384_n08.g1 PHD_FILE: MSMg01no384_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:13 2005
         (496 letters)



>mm_chr2_115744713_115745608
          Length = 896

 Score =  951 bits (492), Expect = 0.0
 Identities = 495/496 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagagccccaaggcatgtgcaggagttcagttggtgtgatatttcgggtgtcttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cacagagccccaaggcatgtgcaggagttcagttggtgtgatatttcgggtgtcttgttt 637

                                                                       
Query: 61  ctctgtgatttgggccacatttgccgagggtgaggacatgacagtctgtcacatggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctctgtgatttgggccacatttgccgagggtgaggacatgacagtctgtcacatggcaca 577

                                                                       
Query: 121 cttgccgtaatacgggataaacgctgacacctctgtctctacaaaataattccatctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cttgccgtaatacgggataaacgctgacacctctgtctctacaaaataattccatctttc 517

                                                                       
Query: 181 taattttcacacttccttctgaaaaaatttctgtaatcctgcccttaggtccaattctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taattttcacacttccttctgaaaaaatttctgtaatcctgcccttaggtccaattctta 457

                                                                       
Query: 241 gctaatagctaccataactttgataataaggtgtgactcatgaggacggctccccaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gctaatagctaccataactttgataataaggtgtgactcatgaggacggctccccaagtt 397

                                                                       
Query: 301 cccctgaagctctgccaagagttgaagacaggggccccctatccggggatttcagaaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cccctgaagctctgccaagagttgaagacaggggccccctatccggggatttcagaaagg 337

                                                                       
Query: 361 aatctgaagggaatcactccccacactggtacattttgaacttgtccatccactgccttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aatctgaagggaatcactccccacactggtacattttgaacttgtccatccactgccttg 277

                                                                       
Query: 421 acaaagtctcctttgaaacggtgctgactcgcctctctcaggaggcttcagactcacaga 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 276 acaaagtctcctttgaaacggtgctgactcgtctctctcaggaggcttcagactcacaga 217

                           
Query: 481 cctcagacgcagagag 496
           ||||||||||||||||
Sbjct: 216 cctcagacgcagagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)