BAC Information

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BAC

Clone NameMSMg01-385B19
Chromosome2 (Build37)
Map Location 91,887,037 - 91,887,559
singlet/doubletsinglet
Overlap genenone
Upstream genePsmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385B19.T7 (MSMg01no385_b19.b1)MSMg01-385B19.TJ (MSMg01no385_b19.g1)
ACCAG488389AG488390
length745757
length of high quality
(start - end)		526 (35 - 560)494 (62 - 555)
definitionCHROMAT_FILE: MSMg01no385_b19.b1 PHD_FILE: MSMg01no385_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:35 2005CHROMAT_FILE: MSMg01no385_b19.g1 PHD_FILE: MSMg01no385_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTCT
TTTAACAACAACAACAACAAAAAACAAAAACAAACCCCCCCAAAACAACA
ACAACAAAAAACCAAAAACCCAAAAACAAACAAACAAACAAACAAACAAA
ACCCAAAAAGTCCGAGTGCTCTTAACTGCCAGCTGTCTCTCCAGCTCTGT
GGTTCATTCATTCCTTACACAAAAAGAATAGCATGATATAAATATACACA
GAAGACAATATGTTCATATACCAATGGTCTGCTTCTAGAGGAGAGGTCCT
TTGTGTGTCTTATAGTTCCCATTCTATGCGTCAACGTTTGCAAATCTTAC
CCCCAGTAAAACCATGCTGGTCTCATTGTATGTTAGTGTGGAGGAGCTCA
GAGTACCACTTGTCCTAGACTTGTGGTTTGCCTTTCATCTCAACTCCCAG
TCCCTTATTCTTTATTCTTATTTATTTAGTATTTATTTACGTAAAGACAT
TTTAACAGTACAGAAAAACACTTCATAAACAATAATAAAACATATATTCT
TTACCCTCCAAAGTTGAAACTATTAATATTTTACTATATGTAATTACAGT
TTGTATTTTAAAGAAATAAACAGAGTCCCTTTATGGCAGNAATATATATA
ATCATTGAAACTAATTTCATTTTAGAAACATGAATCATGTGGAAAGACCA
ACATGGTTTGTTCCTAAACAGGCCCAAAAAACCTGGTAAGAAATN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGGGATCTCCAGCACATACCGGTTTGGGTGGTGGTGGTG
TGCACACCTTTAATCCCAGCAGACAGGAGGCAGAAGCAGGAGGATCTCTG
AGTTAAAGACCAACTTGTGTTTCAAGCCAACCAGGACCACGAAGTACAAC
TCTCTATCTCAAAAAAATAATACAAACCAACAAACAGTTGGGCACAGCAA
CAAGCACCCATAATCGCAGTGCTGGCATGCAAGGCAGAGACAGGAGGATT
CTGAGGCTCTCTAGCCAGCTAGCATAGCCAATTTGGTGCACTCCAGATTC
AGCAAGAGAATGTTTTCTCAAAATATAAGGTGGATGAGCTAGAGAGATGG
CTCAGAGATTCTGAGTGCCCGTCACTTTTGAGAAAGAAGCCAAGTTTGGT
TCCTAGGACTCATGATTGGCAGCTCGTAACTACTTGTAACTCCAGCTTTA
GGGGATTCTTGTGACCTGCACACACACAGGACACACACACACACACACAC
ACACCACCTCTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGCCCAATACTTGACCCATTTAAAGCTTCTTATTTTTG
GCTTTGAAATGGAACGGACCCCCCAGGGGTTTTGATGTGGGAACAGAAAC
CCATTTTGGAGGTGTCAAAGGGTTATTTTTGGCTTCCGTGGGTGGGGGGC
GGAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_b19.b1 MSMg01no385_b19.b1 CHROMAT_FILE:
MSMg01no385_b19.b1 PHD_FILE: MSMg01no385_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:35 2005
         (526 letters)



>mm_chr2_91886834_91887759
          Length = 926

 Score =  899 bits (465), Expect = 0.0
 Identities = 509/527 (96%), Gaps = 9/527 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtcttttaacaacaacaacaaca----aaaaacaaaaacaaacccccccaaa 60
           |||||||||||||||||||||||| |||| |    |||||||||||||||  |||| |||
Sbjct: 204 gaattccagtcttttaacaacaaccacaaaaaaacaaaaacaaaaacaaa--ccccaaaa 261

                                                                       
Query: 61  acaacaacaac-aaaaaaccaaaaacccaaaaacaaacaaacaaacaaacaaacaaaacc 119
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 262 acaacaacaacaaaaaaaccaaaaacccaaaaacaaacaaacaaacaaacaa--aaaacc 319

                                                                       
Query: 120 caaaaagtccgagtgctcttaactgccagctgtctctccagctctgtggttcattcattc 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaaaagtccgagtgctcttaactgccagctgtctctccagctctgtggttcattcattc 379

                                                                       
Query: 180 cttacacaaaaagaatagcatgatataaatatacacagaagacaatatgttcatatacca 239
           || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcacacaaaaagaataacatgatataaatatacacagaagacaatatgttcatatacca 439

                                                                       
Query: 240 atggtctgcttctagaggagaggtcctttgtgtgtcttatagttcccattctatgcgtca 299
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgatctgtttctagaggagaggtcctttgtgtgtcttatagttcccattctatgcgtca 499

                                                                       
Query: 300 acgtttgcaaatcttacccccagtaaaaccatgctggtctcattgtatgttagtgtggag 359
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acgtttgcaaatcttactcccagtaaaaccatgctggtctcattgtatgttagtgtggag 559

                                                                       
Query: 360 gagctcagagtaccacttgtcctagacttgtggtttgcctttcatctcaactcccagtcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagctcagagtaccacttgtcctagacttgtggtttgcctttcatctcaactcccagtcc 619

                                                                       
Query: 420 cttattctttattcttatttatttagtatttatttacgtaaagacattttaacagtacag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttattctttattcttatttatttagtatttatttacgtaaagacattttaacagtacag 679

                                                          
Query: 480 aaaaacacttcataaacaataataaaacatatattctttaccctcca 526
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaacacttcataaacaataataaaacatatattctttaccctcca 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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