BAC Information

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BAC

Clone NameMSMg01-385H14
Chromosome2 (Build37)
Map Location 76,101,099 - 76,101,582
singlet/doubletsinglet
Overlap genePde11a
Upstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1
Downstream geneCyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385H14.T7 (MSMg01no385_h14.b1)MSMg01-385H14.TJ (MSMg01no385_h14.g1)
ACCAG488666AG488667
length732738
length of high quality
(start - end)
556 (35 - 590)485 (65 - 549)
definitionCHROMAT_FILE: MSMg01no385_h14.b1 PHD_FILE: MSMg01no385_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:03 2005CHROMAT_FILE: MSMg01no385_h14.g1 PHD_FILE: MSMg01no385_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAGT
TTCCATAAGTTTGTAAGCTTTCTATTGTTGTTAATATCCAGCTTTAATCC
ATGTTGGTCATATAGGATGCAGGGTGCTATTTTAATTTTCTTATATCTCT
TGAGATTTGCTTTGTTCCAAGTATGTGGTCAAGTTTAGAGAAAGTTCCAA
TGGATGCTGAGAAGAGCATGCATTCTCTTTGGTGGCTGGGCCCATCTGGC
TTATAAGATAGTTAGCTACAGCATATCTCTGTTTAGTTTTTGTCGAGATG
TCCTGTCTATTGGTGAGGGTGAGTATTGCAGTCACTCACTATCACTGTGT
GTGTCAATATAGGATTTTAGCTGTAGTAGAGATGGTAAGATTGCAATGTC
CTCTTGGTGATTTTTTTCCTTTGATGAATATGTAATATCCTTCTCTCTCT
TGTCTCATTAGTTTTGGTTAGAAGTCTATTTTGTCTGATATTAAATGGCT
TCATTTAATAGATACACCAGCTTGCTACTTAGGTCAATTTCTTTGGAATC
ATTTTTTTTTCCATCTATTTTGGTGATGTCTATCCTTGAATGTTAAGTGT
GTTTCTTGGATCCAGAAGAGGATGGATCCTGTTTTCCATCCATGCCGTTA
ATCTGGGCCTTTTATTGGAAAATGATGCCACTGATGTTGAAAATATTAAT
GAGCCTGTTGTTGTATTGTTTTTTTGTGCAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTTATGTACAAACTAGGGATTTTATGCCATTTATG
CAGTGGGGAAATGGAACTACTAACTGACCTGCTGGCATCGAACACTGGTG
GTTATGCATTGGCAAGGTTCTTCGTTGTTGTTCATGAATGACCCCACTTC
CAGAGGGAATAGCTTTCTGATTGACAGGGTGCATACGCACTGACTCCCTA
AGGAGGGCTGCTGGTCCTCTGTGTTCTCAGGGCGTCAGGACCTCTCCATC
AGAATTGCCTTCCACCTGAGGCACTGGAGTCCTCTTCAACATTGAAGCTC
TCTTGATCCCCCCCAGCCCTATTACTGCCAGGAATACAGGGTGGATCTAT
GATGTCCGGTCTGAGTGCAGCCAGATATTACCAGCACATTCTACCATTGG
GGTAGGGGCAGTGGACACACACACTGGCTATAGAATTTAATTCATACCTG
AGTATGTCCTACCAGATGCCTCAGAACCTCTAAGCAACATGATGAAGGGA
AAAAGACCTGACTGTGTGACATTCTCATCCAACCTAAAACAGCACGACAC
CCCACAGTTTTAGCATTTTTAAAATCCCACGCATCTAAGCAGGTTCTCAG
CACAGCCATATTGACAGTGTAACTTAGGTCGTCCCGTGACTTCCCAAATG
GTAGCCTTTTCACAGGAAAAAAACCTGAATCTCCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_h14.g1 MSMg01no385_h14.g1 CHROMAT_FILE:
MSMg01no385_h14.g1 PHD_FILE: MSMg01no385_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:03 2005
         (485 letters)



>mm_chr2_76100899_76101782
          Length = 884

 Score =  884 bits (457), Expect = 0.0
 Identities = 478/485 (98%), Gaps = 1/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatgtacaaactagggattttatgccatttatgcagtggggaaatggaactactaac 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 201 ctttatgtacaaactagggattttatgccacgtatgcagtggggaaatggaactactaac 260

                                                                       
Query: 61  tgacctgctggcatcgaacactggtggttatgcattggcaaggttcttcgttgttgttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacctgctggcatcgaacactggtggttatgcattggcaaggttcttcgttgttgttca 320

                                                                       
Query: 121 tgaatgaccccacttccagagggaatagctttctgattgacagggtgcatacgcactgac 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatgtccccacttccagagggaatagctttctgattgacagggtgcatacgcactgac 380

                                                                       
Query: 181 tccctaaggagggctgctggtcctctgtgttctcagggcgtcaggacctctccatcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctaaggagggctgctggtcctctgtgttctcagggcgtcaggacctctccatcagaa 440

                                                                       
Query: 241 ttgccttccacctgaggcactggagtcctcttcaacattgaagctctcttgatccccccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ttgccttccacctgaggcactggagtcctcttcaacattgaagctctcttgatcccccc- 499

                                                                       
Query: 301 agccctattactgccaggaatacagggtggatctatgatgtccggtctgagtgcagccag 360
           |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 500 agccctattactgccaggaacacagggtggatttatgatgtccagtctgagtgcagccag 559

                                                                       
Query: 361 atattaccagcacattctaccattggggtaggggcagtggacacacacactggctataga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atattaccagcacattctaccattggggtaggggcagtggacacacacactggctataga 619

                                                                       
Query: 421 atttaattcatacctgagtatgtcctaccagatgcctcagaacctctaagcaacatgatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttaattcatacctgagtatgtcctaccagatgcctcagaacctctaagcaacatgatg 679

                
Query: 481 aaggg 485
           |||||
Sbjct: 680 aaggg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space:   415150
Effective search space used:   415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)