BAC Information

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BAC

Clone NameMSMg01-385J04
Chromosome2 (Build37)
Map Location 58,123,338 - 58,123,817
singlet/doubletsinglet
Overlap genenone
Upstream geneGpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926
Downstream geneAcvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650, Pkp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385J04.T7 (MSMg01no385_j04.b1)MSMg01-385J04.TJ (MSMg01no385_j04.g1)
ACCAG488742AG488743
length780765
length of high quality
(start - end)
368 (30 - 397)488 (61 - 548)
definitionCHROMAT_FILE: MSMg01no385_j04.b1 PHD_FILE: MSMg01no385_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:11 2005CHROMAT_FILE: MSMg01no385_j04.g1 PHD_FILE: MSMg01no385_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCTTTATGC
ACTGCACCCAATTTTTTAATTTCTTTATTTGGGTTGTTGGTGTCTAACTT
CTTGAGTTCTGTATATATTTTGAATTTTAGCCCTTTTCTAGATGATCGTA
GGGATGGTAGAGATCCTTTGCCAAACTTTTTCCCAATTTTTTCCTATTGA
AAGTGTTTTTTGCCTTGCAGAAGCTTTTCAGTTTCATGAGGTCCTTTCTA
TGAATTGTTATTAGAGCCTGAGCCATTGGTTCAGGAAGTTGTCTCCTGTA
CAAATGATCAAGACTTGACCCTACTGTCTGTCTGGTTAGATTTAGTGTAT
CTGGTTTTATGTTGAGTTTTTTTAATTCACTTGGACTTGAGTTTTGTGAA
GTGTGATAGATATGGATCCACTTGCATTCTTCTTAATGCAGACATCCAGC
TAGACTAGCACCATCTGTTGAATATGTATTTTTTTCCTTGTATGGTTTTG
CCTTTTTTGTCAAATATTAATTGTGCTTACCATTGCGTGCTTTATACCAG
GCTCTTTTGATTTCATTCCCTTCGTTATATTTGATTGTTTCTTATTTCCC
TAACCCCGCTTCTCTCTTCTTTCCACCTATCCTGTTTTTTTCTTCTTTAC
GCCCTTTTTCTCCCCTTATCTCTTCAAATTATTTCTCTTCTATTACTTTC
TTCGCCTTTTTCTCCCTTCTATTTCTCACAGTTACGCCTATTTCTTCCCC
CCCATTCTCTCTCTTTCTTCCCCTCCCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCAGTATTCGTTTCCTTTATGTAACTTGAAAAACTAATA
TTATCAACCACTCAGAAATGTTTATGCTTAGTGTCCTAAAATGGTGTCAC
TGTAGTTTTTGAAGCTCCCCTCTCTCTCTTTTCACTTGTGGAATGTATTA
TCTCCATGAATAACAATACTGTGTTTTAATTCCAGATCCTGATATTCACT
TAGATTTTATTCACTGTCTTAGTGAAGACAGTCATCATTTTAAGGGCTTT
TAATTTTTTTTTGCAGGATTCTTTAAAACTAAACCAAAAAAGATAGAGAA
ACAGATAGATGGACAGAAAGAAAGAAAGAGAGAAAGAAAGGAAGAAAGGA
AGAAAGAAGAAAGAGGCAAAGGAAGAAAATCTAGAAGGCAAAACATTCAT
TAAGTCTAGTATTAGTCAGAATTTCTATAGTGGTCACGTTCTTCTGAGGA
TACTGATGCAAACTCCCTGGTGCCTGGCTTTCTCTTTACCCTCCACCTTA
GCTTCGTTTCATTATCTTTCTCCTACTATTAAACTTGATGTTCTTTCATC
ACCTTCCAAAATTATAGTTACTTTCCTAATTATTTTTTAAACATACCTTA
TTATTTTAACTTAACCATTTATACCAATCGCACTTTTTTTAATGTAACAA
AATACCCTCCTATATGTCCCCAAAATTCCCTTTATAATGGGGCCCCACCT
CTTTAATTGCCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_j04.g1 MSMg01no385_j04.g1 CHROMAT_FILE:
MSMg01no385_j04.g1 PHD_FILE: MSMg01no385_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:11 2005
         (488 letters)



>mm_chr2_58123338_58124230
          Length = 893

 Score =  866 bits (448), Expect = 0.0
 Identities = 470/480 (97%), Gaps = 5/480 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagtattcgtttcctttatgtaacttgaaaaactaatattatcaaccactcagaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 480 ttcagtattcgtttcctttatgtaacttgaaaaactaatattatcaatcactcagaaatg 421

                                                                       
Query: 61  tttatgcttagtgtcctaaaatggtgtcactgtagtttttgaagctcccctctctctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 420 tttatgcttagtgtcctaaaatggtgtcactgtagtttttgaagctcccctctctctttt 361

                                                                       
Query: 121 ttcacttgtggaatgtattatctccatgaataacaatactgtgttttaattccagatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttcacttgtggaatgtattatctccatgaataacaatactgtgttttaattccagatcct 301

                                                                       
Query: 181 gatattcacttagattttattcactgtcttagtgaagacagtcatcattttaagggcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gatattcacttagattttattcactgtcttagtgaagacagtcatcattttaagggcttt 241

                                                                       
Query: 241 taa-----tttttttttgcaggattctttaaaactaaaccaaaaaagatagagaaacaga 295
           |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taattttttttttttttgcaggattctttaaaactaaaccaaaaaagatagagaaacaga 181

                                                                       
Query: 296 tagatggacagaaagaaagaaagagagaaagaaaggaagaaaggaagaaagaagaaagag 355
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 180 tagatggacagaaagaaagaaagagagaaagaaaggaagaaaggaagaaggaagaaagag 121

                                                                       
Query: 356 gcaaaggaagaaaatctagaaggcaaaacattcattaagtctagtattagtcagaatttc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gcaaaggaagaaaatctagaaggcaaaacattcattaagtctagtattagtcagaatttc 61

                                                                       
Query: 416 tatagtggtcacgttcttctgaggatactgatgcaaactccctggtgcctggctttctct 475
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  tatagtgttcatgttcttctgaggatactgatgcaaactccctggtgcctggctttctct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 893
Length adjustment: 10
Effective length of query: 478
Effective length of database: 883
Effective search space:   422074
Effective search space used:   422074
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)