BAC Information

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BAC

Clone NameMSMg01-385J23
Chromosome2 (Build37)
Map Location 128,820,773 - 128,821,224
singlet/doubletsinglet
Overlap genenone
Upstream geneAcoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736
Downstream geneZc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385J23.T7 (MSMg01no385_j23.b1)MSMg01-385J23.TJ (MSMg01no385_j23.g1)
ACCAG488780AG488781
length739749
length of high quality
(start - end)
493 (34 - 526)497 (64 - 560)
definitionCHROMAT_FILE: MSMg01no385_j23.b1 PHD_FILE: MSMg01no385_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:14 2005CHROMAT_FILE: MSMg01no385_j23.g1 PHD_FILE: MSMg01no385_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAATA
ATATTAAATGATCTGCATACTAGGATAAATGTGGCTGGAAGTTTATTGTG
GTGTTTAAATGAGAACGGCTCTCACCAGCTCCTATGTTTGAGCTAGTTGG
TGGAACTGTTTGGGGAGGACTAGGAGGCTTGATCTTCTTAGAAGAAGTAT
CGCTGGGGTGAGCTATGAGGTTTCAAAAGCCTCAGGTCATTGCCAGCATC
CTCTCTCTGCCTGTGGTTGATAAGTTGCCTTGGTCATGGTGTTTTATTAC
CGCAATACAAACGTAACTAAGACACTACTTTTTTTAAAAAGTTAAAATAA
AAGCCTTTAACTTTTTTAAAACTTAGGCTATTAACCAGGGCTATAACAGC
CAAACTACCCAAAGATATTTACTCCAGAAAAATAACTGTCAGTAAGAAGA
GGAAGCAGATGGTGATGGGGCTTGCCCAGCCCCCCTTGCTCTGCCCTCAG
CTCTGTCGAAGCCTTGATCTTGTCAGGCTTATGGTTATGGTTGTGGTTCG
GGCGTTGGAATTGGATACACCTTTTGGATGCTTTCCCCCTTTGCTGTTCG
CTTGTTTTTATGCCATGTTTTGATGTCCATTCCTGATGTTAGGTTTCCGG
GGCGCTTCCCCCCCTTTTTTCTTACCCCCTCTGTTCCCGCCCTCGTTTGT
CTTTTTTCGTATATCTTTTTTCTTTCCGTTTTCCCTTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACAGTAGGCAGGCAGTTCCAGGGGAGCTAAGACCTCT
AGCCTCCACAGCACTAATGTGCACACACCTTCCCCACATCTACACATCAT
TAAAAAATAAATCTGCAAAGAAAAACAAACAAAAAAAAGCAAGGTGATAG
TGACTGAGAAATGACAGTCAAAGTTGTCTTCTGGCTTTCGTGGGTATACA
CAAAGGTACAAATGCATCCGCCACACATATACCTTTGTGCACACATAGAC
AAGGAATGGGGAAGAGAGAGAGAGATGGCTTAGCAGTTAATACCGCTCGC
TTCTCTTCCAGAGGACAAGTGTTCAGTCTCCAGCACCCAGATGGAATCTT
ATAACAATCTGTAACTCCAGCCCCAGGGGATCCAATGTCTCTTCTAGCCC
CTGGGGGCACTGCATGTACATGGTGTAAAAATGTACACACAAAATAACAA
AATCAAAATTTTTAAAAAGACAGCAAAAAGATGAAACATATAATTTTATC
TCTAAACTCAGAAGAAATTGGTACTATTAAATTAAGAAAAAGAATAAAGT
TCTTGTAGATAAGAATAGTGCTTTTCTAATATTAAATTAATATTTATATA
AGAAACTTGGTCATACAATGCACATACTTAAAAAACAAGCAAAGTGTTGT
CTTACGGCCTGTTTTCTTTTCTAAAACTGGGGATAATATCTACACAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_j23.g1 MSMg01no385_j23.g1 CHROMAT_FILE:
MSMg01no385_j23.g1 PHD_FILE: MSMg01no385_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:15 2005
         (497 letters)



>mm_chr2_128820773_128821665
          Length = 893

 Score =  808 bits (418), Expect = 0.0
 Identities = 446/458 (97%), Gaps = 6/458 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtaggcaggcagttccaggggagctaagacctctagcctccacagcactaatgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acagtaggcaggcagttccaggggagctaagacctctagcctccacagcactaatgtgca 393

                                                                       
Query: 61  cacaccttccccacatctacacatcattaaaaaataaatctgcaaagaaaaacaaacaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 392 cacaccttccccacatctacacatcattaaaaaataaatctgcaaagaa----aaacaaa 337

                                                                       
Query: 121 aaaaagcaaggtgatagtgactgagaaatgacagtcaaagttgtcttctggctttcgtgg 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaaaggcaaggtgatagtgactgagaaatgacagtcaaagttgtcttctggctttcgtgg 277

                                                                       
Query: 181 gtatacacaaaggtacaaatgcatccgccacacatatacctttgtgcacacatagacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 276 gtatacacaaaggtacaaatgcatccgccacacatatacctttgtgcacacatagacaaa 217

                                                                       
Query: 241 gaatggggaagagagagagagatggcttagcagttaataccgctcgcttctcttccagag 300
           |||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 216 gaatgggga--agagagagagatggcttagtagttaataccgcttgcttctcttccagag 159

                                                                       
Query: 301 gacaagtgttcagtctccagcacccagatggaatcttataacaatctgtaactccagccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gacaagtgttcagtctccagcacccagatggaatcttataacaatctgtaactccagccc 99

                                                                       
Query: 361 caggggatccaatgtctcttctagcccctgggggcactgcatgtacatggtgtaaaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  caggggatccaatgtctcttctagcccctgggggcactgcatgtacatggtgtaaaaatg 39

                                                 
Query: 421 tacacacaaaataacaaaatcaaaatttttaaaaagac 458
           ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 38  tacacacaaaataacaaaatcaaaaatttaaaaaagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 893
Length adjustment: 10
Effective length of query: 487
Effective length of database: 883
Effective search space:   430021
Effective search space used:   430021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)