BAC Information

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BAC

Clone NameMSMg01-385K01
Chromosome2 (Build37)
Map Location 19,221,010 - 19,419,267
singlet/doubletdoublet
Overlap geneArmc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik
Upstream geneDnajc1, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521
Downstream geneLOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385K01.T7 (MSMg01no385_k01.b1)MSMg01-385K01.TJ (MSMg01no385_k01.g1)
ACCAG488784AG488785
length742762
length of high quality
(start - end)
178 (59 - 236)375 (61 - 435)
definitionCHROMAT_FILE: MSMg01no385_k01.b1 PHD_FILE: MSMg01no385_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:15 2005CHROMAT_FILE: MSMg01no385_k01.g1 PHD_FILE: MSMg01no385_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,221,010 - 19,221,184)(19,418,893 - 19,419,267)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCAGTTT
TCGCCTAGTGCTAGCCAATGGAAGTGTATGAAGAGCAAGCTTTTCCACCT
CCCATGCTAGGGATAATTGGTGTAAACGTGAATAACTACTCACGCAGATG
TAAGCAGAGTGCCCAGAGCAATTGAAGTCTTTAATTAGCCGGGCAGTGGT
GGTGCACACCTTTAATCCCAGCATTTAGGAGGCAGAGGCAGGGGCAGGGG
CAGGCAGATTTCTGAGTTCATGGCTTGCTTGGAGTGAATAGTGAGTTCCA
GGATGTTTTTGTGCTACACAGAGGAAAATTTAAAAAAAATAAAAGAACAA
AGAACAAAGAATAAGAAAACGATACTAGCAACAAAGTTTTAAATTAACAT
GCCACAAAATGTCTTTCTGTTTAAAATGCTACAGAATTTTAAAGAGGGAA
TTTGTGTAGCCATTGACACCACAGTCAGAATAGAATAAAGCTCAGCCAAC
CCAGAGTCCTGCCCTGATACTGCAACTCATTCTTTTCTCTGGAAAAAAGA
ACGAGACCTGGTGGTGGTTTTTCTGATATTTTTGCCCTTTCAAGGCCTTA
CTATGTATCTTCTATTTACCCTCGAACTCACCTTGTTAACCTCCCTTGAC
TTGTATCCCCCGCAATCTGCTTATTTTTGTCTTCTGAACTGTTGGTATTA
ATAGTATGTTTCTACCTTGTCCAGTTTATTAACGACTCCGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTGCCCTGTGACTGTAGTGGAAAATTTGAAAACCTATG
GGTGGAATAAAATTTCATAGAACTAAATGCACATACAAACATCACACAAA
CAGACACAAACAGATACACACACACACACTGAATAAGGTCTGGGGATTGT
GGGTCACTTGACTAGTGTGGATTCATGCCTGGGAGATAATTAGGAAACAC
GGTGTGAGAAGCATGAGTCCCTAGCATTTGGCCTTGCCCAGTTTGACAGT
CAGACAAGACACAATGATGCCTATCTCTACTGTGTTCGTTGTAGTGACTA
TTTTGGAGTTTTGGTGTCTTTGAACAAACAGAAATATTATAAGAATAATG
TTTTTGTTTTTATCCCAGGTTTGGGATGTGGGGCTGCTTCAGAGTGTTCA
CCACAGCTGACTATGATTTGCCTCAGGTTTCTAATAGGGGTTGTTTTTGC
CAACTGCATATAGCTTTTGTGTATGCGACGATTTTTGTATACCCGACAAC
TCCTCTAAATGTGTTATATTGTTATGACCCTGTATATTAAGATTGTTTCA
CTCTTTTTTCGTTTTTATCTTTTCTTTATCCCACTTTATTGTTCCCCCAC
CTAACCTCCACAATATCCCCCCACCCTCTCCTGCTCCACCCCATCTCCTG
TTTTTTATTCATACCTCCCTCATTCTCCTCTTCTCCCATCTCTTCTATTT
TTACCACCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_k01.b1 MSMg01no385_k01.b1 CHROMAT_FILE:
MSMg01no385_k01.b1 PHD_FILE: MSMg01no385_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:15 2005
         (178 letters)



>mm_chr2_19220807_19221384
          Length = 578

 Score =  339 bits (175), Expect = 8e-98
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   tagccaatggaagtgtatgaagagcaagcttttccacctcccatgctagggataattggt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tagccaatggaagtgtatgaagagcaagcttttccacctcccatgctagggataattggt 263

                                                                       
Query: 64  gtaaacgtgaataactactcacgcagatgtaagcagagtgcccagagcaattgaagtctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaaacgtgaataactactcacgcagatgtaagcagagtgcccagagcaattgaagtctt 323

                                                                  
Query: 124 taattagccgggcagtggtggtgcacacctttaatcccagcatttaggaggcaga 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taattagccgggcagtggtggtgcacacctttaatcccagcatttaggaggcaga 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no385_k01.g1 MSMg01no385_k01.g1 CHROMAT_FILE:
MSMg01no385_k01.g1 PHD_FILE: MSMg01no385_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:15 2005
         (375 letters)



>mm_chr2_19418670_19419444
          Length = 775

 Score =  717 bits (371), Expect = 0.0
 Identities = 374/375 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgccctgtgactgtagtggaaaatttgaaaacctatgggtggaataaaatttcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttttgccctgtgactgtagtggaaaatttgaaaacctatgggtggaataaaatttcatag 539

                                                                       
Query: 61  aactaaatgcacatacaaacatcacacaaacagacacaaacagatacacacacacacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aactaaatgcacatacaaacatcacacaaacagacacaaacagatacacacacacacact 479

                                                                       
Query: 121 gaataaggtctggggattgtgggtcacttgactagtgtggattcatgcctgggagataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaataaggtctggggattgtgggtcacttgactagtgtggattcatgcctgggagataat 419

                                                                       
Query: 181 taggaaacacggtgtgagaagcatgagtccctagcatttggccttgcccagtttgacagt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 418 taggaaacacggtgtgagaagcatgagtccctagcatttgaccttgcccagtttgacagt 359

                                                                       
Query: 241 cagacaagacacaatgatgcctatctctactgtgttcgttgtagtgactattttggagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagacaagacacaatgatgcctatctctactgtgttcgttgtagtgactattttggagtt 299

                                                                       
Query: 301 ttggtgtctttgaacaaacagaaatattataagaataatgtttttgtttttatcccaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttggtgtctttgaacaaacagaaatattataagaataatgtttttgtttttatcccaggt 239

                          
Query: 361 ttgggatgtggggct 375
           |||||||||||||||
Sbjct: 238 ttgggatgtggggct 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)