BAC Information

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BAC

Clone NameMSMg01-385M12
Chromosome2 (Build37)
Map Location 103,136,115 - 103,309,424
singlet/doubletdoublet
Overlap geneEhf, Elf5, Cat
Upstream geneTrim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
Downstream geneAbtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385M12.T7 (MSMg01no385_m12.b1)MSMg01-385M12.TJ (MSMg01no385_m12.g1)
ACCAG488901AG488902
length796774
length of high quality
(start - end)		247 (53 - 299)441 (57 - 497)
definitionCHROMAT_FILE: MSMg01no385_m12.b1 PHD_FILE: MSMg01no385_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:26 2005CHROMAT_FILE: MSMg01no385_m12.g1 PHD_FILE: MSMg01no385_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,309,195 - 103,309,424)(103,136,115 - 103,136,555)
sequence
TATACGACTCACTATTCTAAGAGGATCCGCGGAATTCTGCGATTGACAGA
AATGCATATGAATTCATTCATTCATTCATTCATTCATTCATTCATTCATC
TGTTCAGTTTATTTTGATTTATAGATACTTTTTTCTAAACCAAGAGATCT
GGTTAACATCAGAACAGCTTTGTACTGTTACGATACACTGAACATATTGG
GTGACCTGTGGATGGTTGCCTTCCCCTTTGCTCCCTCCCAGAGTTGCTTT
TGCTAAATGGTTTCATGACGCGTGGCTTCCGGAGTCTTTTGGAATGAGGT
TTTTTTTCAGCCAGTTGACCAGGGCTATAGAGATCGGAGTACTGGCAAAG
TGACCCAATGGTTTTGAGTGTGTTTGGCTTGTTTGGAAAGGCACCACGCT
GATTTTTGCCTGCTCATAGAGAATTGGTTTAGAGTAGGTACAGTGAAGCT
CATGGTAGCTCGATGAACTCTGATTCTATAACTTCTTANAACAAAACTAA
AGCTAGACCACAGAGGCAGGGGGATATGCTGATCACAATTTTAGGAATTT
ATTTGGGTTGCTTTAAAAATGGCGAATAAGTTACTTTCCTACATTCCTTG
TTCTTAGGCAAATGTATTTGGAAGTTCCACAACATATCTTCTTCTTTTTT
TTTTTTCACAAACTCGTCCCCAAATTACCCTTCACCCCTTCTTAACTCTC
CCATCCCCCCTTTTTCTATTCCCTCATTACCCTTTTTCTTCACCTCCCCC
CTCCCGTTCTTATTTTCACCCATTTACCTTTCTCTTTTCTCTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGTTTCACAACACTAACAATGACTCGGCCCCTCCCCTGCTTGTT
TCAAAGGAAACGTTCAGTGTAAACTCAAAAGGAATTCACCAACTCTGCAA
CTCCATCTTCCCCTCTTCTGACCCAAGCCTCAGGCTTGCTCCTTTGATGA
GGAAGATGAGCATGGACACGGTCCTCCAAAGCAACTTCCCAGACTAACAG
GCCCCAGGAATTATCACGATTTCAAAAACCTCACCCTGATGAAAGGCACC
ATGAGCTACAGAATGCAGGTCTCAGTGCAAAAGGAAAAGAAGAGCTCCTT
GGTGAAGCCTTATTAAGTACGTTAAGCTAGGTATGATAGCGCATGCTCTA
ATGCTAACACTTGAGACACAGACACAAGAGGGTAAGACATTTGAGGCAGC
CTGGTCTATACAGTGAGTACCAGGCCAGCCCTAGCTACATAGTGGAGAGA
GGCAGAAGGAAAGGAGAGAGGAGAGGATAGTACAGGATATCTCTCCCCTC
CCCCATTCTTTTTTTTCCTCTATTTCTCTCATACACTACTCAATTAAATC
TCTTTTTTCCCTCCTTTATCCTCTTTTCACTTTCTTTCCCTCCCCCATCT
TCTATAATTCTTCTTTTTTCTATTCCTCCTCTCCCCTCATTTTTTTTTTT
TTCCTTCCCCCACTTTTCTCTTCTTCTCTTTTTTTTCTCCTTCTCTTCTT
ATTATTTTCTCTTCTATTTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_m12.b1 MSMg01no385_m12.b1 CHROMAT_FILE:
MSMg01no385_m12.b1 PHD_FILE: MSMg01no385_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:26 2005
         (247 letters)



>mm_chr2_103308948_103309594
          Length = 647

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 18  attcattcattcattcattcattcattcatctgttcagtttattttgatttatagatact 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 attcattcattcattcattcattcattcatctgttcagtttattttgatttatagatact 418

                                                                       
Query: 78  tttttctaaaccaagagatctggttaacatcagaacagctttgtactgttacgatacact 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttttctaaaccaagagatctggttaacatcagaacagctttgtactgttacgatacact 358

                                                                       
Query: 138 gaacatattgggtgacctgtggatggttgccttcccctttgctccctcccagagttgctt 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaacatattgggtgacctgtggatggttgccttcccctttgctccctcccagagttgctt 298

                                                             
Query: 198 ttgctaaatggtttcatgacgcgtggcttccggagtcttttggaatgagg 247
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttgctaaatgttttcatgacgcgtggcttccggagtcttttggaatgagg 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no385_m12.g1 MSMg01no385_m12.g1 CHROMAT_FILE:
MSMg01no385_m12.g1 PHD_FILE: MSMg01no385_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:26 2005
         (441 letters)



>mm_chr2_103135915_103136755
          Length = 841

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttcacaacactaacaatgactcggcccctcccctgcttgtttcaaaggaaacgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttcacaacactaacaatgactcggcccctcccctgcttgtttcaaaggaaacgttca 260

                                                                       
Query: 61  gtgtaaactcaaaaggaattcaccaactctgcaactccatcttcccctcttctgacccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtaaactcaaaaggaattcaccaactctgcaactccatcttcccctcttctgacccaa 320

                                                                       
Query: 121 gcctcaggcttgctcctttgatgaggaagatgagcatggacacggtcctccaaagcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcaggcttgctcctttgatgaggaagatgagcatggacacggtcctccaaagcaact 380

                                                                       
Query: 181 tcccagactaacaggccccaggaattatcacgatttcaaaaacctcaccctgatgaaagg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccagactaccaggccccaggaattatcacgatttcaaaaacctcaccctgatgaaagg 440

                                                                       
Query: 241 caccatgagctacagaatgcaggtctcagtgcaaaaggaaaagaagagctccttggtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccatgagctacagaatgcaggtctcagtgcaaaaggaaaagaagagctccttggtgaa 500

                                                                       
Query: 301 gccttattaagtacgttaagctaggtatgatagcgcatgctctaatgctaacacttgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccttattaagtacgttaagctaggtatgatagcgcatgctctaatgctaacacttgaga 560

                                                                       
Query: 361 cacagacacaagagggtaagacatttgaggcagcctggtctatacagtgagtaccaggcc 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagacacaagagggtaaggcatttgaggcagcctggtctatacagtgagtaccaggcc 620

                                
Query: 421 agccctagctacatagtggag 441
           |||||||||||||||||||||
Sbjct: 621 agccctagctacatagtggag 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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