BAC Information

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BAC

Clone NameMSMg01-386H13
Chromosome2 (Build37)
Map Location 121,190,644 - 121,397,487
singlet/doubletdoublet
Overlap geneStrc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
Upstream geneTmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386H13.T7 (MSMg01no386_h13.b1)MSMg01-386H13.TJ (MSMg01no386_h13.g1)
ACCAG489431AG489432
length746741
length of high quality
(start - end)
244 (74 - 317)577 (72 - 648)
definitionCHROMAT_FILE: MSMg01no386_h13.b1 PHD_FILE: MSMg01no386_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:17 2005CHROMAT_FILE: MSMg01no386_h13.g1 PHD_FILE: MSMg01no386_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,190,644 - 121,190,887)(121,396,911 - 121,397,487)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTCCGCGGA
ATTCAGCATCATTGCAAAAAACTGTGGTCATAAGATGGAAGAAAAGATCC
AAATGAACTCCCTTCCTTCATGGGACAAATCTTTCATGAGCCCATCTCTA
CTACAACACCACCACTCCAAATCTTCTGTAGGTTACCTAAACTCCCAACT
GCTGATGTGCTGTAACTCCTCTGGTCGCAATCCACAGACTGTGTAACCCA
GTGCTGTCAGATAAATGAAGTCCAGGTGGCTCACATGCCGACCACTCTGC
CTTAGGAAACTGGAGACCTTTTCTCGGAGCTGCAGGGGGGGGGGGGGAAC
ACAGGATAAAGAGATTACATCGCGGGGAATAAACGGATGGGAAAATGAGT
AGGGGAGTGGAAGGGCTACTAAACTGTATTTCCTTGTTACTAACATCGAA
AGGTCCAAAAGCTATGGAGAAAATCAGGGACACACCCTTGCCGTCAAACA
ATAGAAGGAAGAGGAGAAAGGGGAAAGGAGAAAGGAGGGTAGAGAGTACT
AGGAATCCAGAATCTCAGAAAGAATGAGTCAGGTCCTAAGGTCACAGTGT
AGAGTCCTATGAAAAGACAGAAGCTGACTGTGGTGACACACTTGTCATAC
CATAATTTAGGAGGCACAGGCAACAGAACCAGTAGCTCTAGGCCATCCTC
AGCTATGTGACAGGCTCAAACCCAGGGTAGGCCACCTAAAACTTGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCAACATGGAGTGAAGATGTGCGTAGA
AGACAGATGCCAAGCCATGCACCTGCCAAACACCTCACTGCACCTCAAGC
CTGTTAGGAGATGTAGGGGGTCTACCTTCGCCCCGATACCTGCAGACACT
GATTCTGCCTTGTTCTCATCCTGTGAAAATGCCCAAATTTTCTTCCTTTC
TGTGACTTTGGCAGCTCCCATGGGCACAGGCTGTGGACTTGTTTCTTGAT
CTACTTTCCAGAAGTGTTTCTTAGGCTGCCACGTCACAGCACCAAGGGAC
AGCTGCCTCTTCAAGGGAACACCTGAGGGAGCCTGGCCTGCTTCTCGCTT
GGGTGGGCTCGCTTCCTGCTGTGCCATATGACTTTAGGCAAATGATATAT
TTAGTAATGAACAATTTCTGTTCCCGTCTGCCAGCCATCAGAGCTGATGA
CTTCACAAGCTGCCCTCCCCACTCAGTCTGCTTTTCCAGGACTCTGCATG
CAGATGAGCCCAGAGCCACTGCCACCACTGACTCGGTGGCTTCATCTACA
TGTTCCAGGAGGCAGACAGGAGGAGAGCCATGCCAAGGCCTCTTCAGATA
GCAAGGGCCGGCTTGTTTCCACTAATAGCATCACCCTGTGCATTGAGAGC
CATAGGGTACAGAAGTGTGGCAGCATCTCCTACCACTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_h13.b1 MSMg01no386_h13.b1 CHROMAT_FILE:
MSMg01no386_h13.b1 PHD_FILE: MSMg01no386_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:17 2005
         (244 letters)



>mm_chr2_121190444_121191087
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggtcataagatggaagaaaagatccaaatgaactcccttccttcatgggacaaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggtcataagatggaagaaaagatccaaatgaactcccttccttcatgggacaaatctt 260

                                                                       
Query: 61  tcatgagcccatctctactacaacaccaccactccaaatcttctgtaggttacctaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgagcccatctctactacaacaccaccactccaaatcttctgtaggttacctaaact 320

                                                                       
Query: 121 cccaactgctgatgtgctgtaactcctctggtcgcaatccacagactgtgtaacccagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaactgctgatgtgctgtaactcctctggtcgcaatccacagactgtgtaacccagtg 380

                                                                       
Query: 181 ctgtcagataaatgaagtccaggtggctcacatgccgaccactctgccttaggaaactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtcagataaatgaagtccaggtggctcacatgccgaccactctgccttaggaaactgg 440

               
Query: 241 agac 244
           ||||
Sbjct: 441 agac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no386_h13.g1 MSMg01no386_h13.g1 CHROMAT_FILE:
MSMg01no386_h13.g1 PHD_FILE: MSMg01no386_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:17 2005
         (577 letters)



>mm_chr2_121396711_121397687
          Length = 977

 Score = 1077 bits (557), Expect = 0.0
 Identities = 572/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaacatggagtgaagatgtgcgtagaagacagatgccaagccatgcacctgccaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cttcaacatggagtgaagatgtgcgtagaagacagatgccaagccatgcacctgccaaac 718

                                                                       
Query: 61  acctcactgcacctcaagcctgttaggagatgtagggggtctaccttcgccccgatacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 acctcactgcacctcaagcctgttaggagatgtagggggtctaccttcgccccgatacct 658

                                                                       
Query: 121 gcagacactgattctgccttgttctcatcctgtgaaaatgcccaaattttcttcctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gcagacactgattctgccttgttctcatcctgtgaaaatgcccaaattttcttcctttct 598

                                                                       
Query: 181 gtgactttggcagctcccatgggcacaggctgtggacttgtttcttgatctactttccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gtgactttggcagctcccatgggcacaggctgtggacttgtttcttgatctactttccag 538

                                                                       
Query: 241 aagtgtttcttaggctgccacgtcacagcaccaagggacagctgcctcttcaagggaaca 300
           |||||   |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aagtggcacagaggctgccacgtcacagcaccaagggacagctgcctcttcaagggaaca 478

                                                                       
Query: 301 cctgagggagcctggcctgcttctcgcttgggtgggctcgcttcctgctgtgccatatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cctgagggagcctggcctgcttctcgcttgggtgggctcgcttcctgctgtgccatatga 418

                                                                       
Query: 361 ctttaggcaaatgatatatttagtaatgaacaatttctgttcccgtctgccagccatcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctttaggcaaatgatatatttagtaatgaacaatttctgttcccgtctgccagccatcag 358

                                                                       
Query: 421 agctgatgacttcacaagctgccctccccactcagtctgcttttccaggactctgcatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agctgatgacttcacaagctgccctccccactcagtctgcttttccaggactctgcatgc 298

                                                                       
Query: 481 agatgagcccagagccactgccaccactgactcggtggcttcatctacatgttccaggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agatgagcccagagccactgccaccactgactcggtggcttcatctacatgttccaggag 238

                                                
Query: 541 gcagacaggaggagagccatgccaaggcctcttcaga 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gcagacaggaggagagccatgccaaggcctcttcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)