BAC Information

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BAC

Clone NameMSMg01-386N17
Chromosome2 (Build37)
Map Location 147,033,100 - 147,033,412
singlet/doubletsinglet
Overlap genenone
Upstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816
Downstream geneLOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386N17.T7 (MSMg01no386_n17.b1)MSMg01-386N17.TJ (MSMg01no386_n17.g1)
ACCAG489727AG489728
length745835
length of high quality
(start - end)
330 (321 - 650)184 (68 - 251)
definitionCHROMAT_FILE: MSMg01no386_n17.b1 PHD_FILE: MSMg01no386_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:45 2005CHROMAT_FILE: MSMg01no386_n17.g1 PHD_FILE: MSMg01no386_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAAATTTGCGGCGCTAAACGACTCCTANAACGNGACCTGCGCGGAATCA
CTCTTGTATCGAAAACAAGGCTTGTTTACTAGTTAGGCGCAGTGGAAGCC
AGTGCCATCTTATAATGGCGATTGCTCACGGCACGGCTCTCCACACCAGG
CCCTTGAGACAGATGAAATAAAGGTGCTTGCCACTGAGCCTGACCATCTG
AATTCAATCCCCAGAACCCACACCGTAGCAGGAGAGAACTGAGTTCCTTA
AGTTGTCCTCTGACCCCCCACATGTGTACCATGGTGCATGTACCCAAACA
CACGCATGTAATATTATGNATTTGTAATAAACACTAATAAAATTACACCT
ATAATTATCTATCTACCCATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATTGATCTATCTATCTATCCTACTCTAAGTGCTA
AAGAAAAGAAATGCAGTTTGGTGGTGCCAATGATTGAAATTGAATTTAGA
ATTATTGTATCTGTCCAGTTATTTACTAAAAAAAAAACCAAAAAACCCAA
AAACCCTAGAATATTTTAGAGAAGTAGTATAGGATCTGAGTGATGGTGCA
CTTCCGTAATCCTAGGAGGTGGGAGGCTGTTAGCACAAGTTCAAGGCCAA
CTTGAGCTGCAAGTGAGTCCCTGCCTGTAAGACTATGAAGGAAGAGGGCA
GAAAAAGAGGAGTGGGCACAGAAGGTAAGGAAGAAGGAGAAAGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCAGAAATTCAACCTCATTTAATTAGTCTCTCTCTATTCCTCT
TTGTCTCTCACTGCCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGT
CTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TNNNNNNTTNNNNNNNTNTTNTTTTTTTTTTTTTTTTTTTTTTTTNNTTN
NNNNNNNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTTTTTTTTTCCCCCCCCCCCCCCTCTTTTTCTTTCTCTTTTCTTTTT
TTTCTTNCCCCCCCCCCCCCTTTCNTATCAGCCTTCTTTTTTTTCTTCTC
TTCTTGTCCGCTCTTTGTCTTGCCTGTCGCCCCTTTTCGTCTTTTGGTTC
GCGTGTTGCGCCTTTTTTCTCTTTGCGCTTTACCTCTTTTGGCCTCTCTT
TGGCTTTTTTCTCTCTTCTTTGCTCCGGGCTTTTCCTTCGTGTTATTCGC
TCTTGGTTGTTTTTTTTGTTCCTCTCTTCCCTCCTCTTTCCCTGGCTTTT
GTTTCCTGATCTCCCTGTCGCCCGGTTCTTTGTTTTTTCCGTGTGCCGTA
TCCTTTTTTTTTTTTTTTGCATTCCAACTAATTCACAACACATTATTTGA
CTACACTCATATATTCTGCTATTATTTCCCTTATCTTGTAAAATCGTCTG
CACCTCTACATATAACATTTCGTATTCCATGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_n17.b1 MSMg01no386_n17.b1 CHROMAT_FILE:
MSMg01no386_n17.b1 PHD_FILE: MSMg01no386_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:45 2005
         (330 letters)



>mm_chr2_147032883_147033612
          Length = 730

 Score =  571 bits (295), Expect = e-167
 Identities = 313/329 (95%), Gaps = 16/329 (4%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttgtaataaacactaataaaattacacctataattatctatctacccatctatctatcta 61
           ||||||||||||||||||||||||||||||||||||||||||||                
Sbjct: 218 ttgtaataaacactaataaaattacacctataattatctatcta---------------- 261

                                                                       
Query: 62  tctatctatctatctatctatctatctatctatctattgatctatctatctatcctactc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctatctatctatctatctatctatctatctatctattgatctatctatctatcctactc 321

                                                                       
Query: 122 taagtgctaaagaaaagaaatgcagtttggtggtgccaatgattgaaattgaatttagaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taagtgctaaagaaaagaaatgcagtttggtggtgccaatgattgaaattgaatttagaa 381

                                                                       
Query: 182 ttattgtatctgtccagttatttactaaaaaaaaaaccaaaaaacccaaaaaccctagaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttattgtatctgtccagttatttactaaaaaaaaaaccaaaaaacccaaaaaccctagaa 441

                                                                       
Query: 242 tattttagagaagtagtataggatctgagtgatggtgcacttccgtaatcctaggaggtg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tattttagagaagtagtataggatctgagtgatggtgcacttccgtaatcctaggaggtg 501

                                        
Query: 302 ggaggctgttagcacaagttcaaggccaa 330
           |||||||||||||||||||||||||||||
Sbjct: 502 ggaggctgttagcacaagttcaaggccaa 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)