Query= MSMg01no386_p09.b1 MSMg01no386_p09.b1 CHROMAT_FILE:
MSMg01no386_p09.b1 PHD_FILE: MSMg01no386_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:52 2005
(671 letters)
>mm_chr2_86098186_86099257
Length = 1072
Score = 1137 bits (588), Expect = 0.0
Identities = 649/670 (96%), Gaps = 5/670 (0%)
Strand = Plus / Plus
Query: 1 gtgtctatggtaagatgtaagaaaaaatcccccatatctagtagtagaagtccaagaaag 60
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gtgtctatggtcagatgtaagaaaaaataccccatatctagtagtagaagtccaagaaag 260
Query: 61 tatgtatccacttacctttaataaagaaactgattttccattctaatattattaatatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtatccacttacctttaataaagaaactgattttccattctaatattattaatatga 320
Query: 121 ttaccttgtgaatggagagtttatagctttcttccctcttggtaaagctccccaaggaaa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaccttgtgaatggagagtttatagctttcttccctcttggtaaagctccccaaggaaa 380
Query: 181 tttaatctacttaagtcacatcattacaattaaatcttctgagaaacttaaaagtaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tttaatctacttaagtcacatcattacaattaaatcttctgagaaacttaaaaataatat 440
Query: 241 cttgatatttggtgataattacctaggacatcctacaagttcccttgtgagaaaaagcat 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 cttgatatttggtgctaattacctaggacatcctacaagttcccttgtgagaaaaagtat 500
Query: 301 ggaacaattcaaaa-gaagaaacaaaatattataaaagattggtgg--tctggaagacat 357
|||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ggaacaattcaaaaaga-gaatcaaaatattataaaagattggtgaaatctggaagacat 559
Query: 358 ctacaatgtaaagatattcttacattctcttctaagaaaagtatgattaaggtacaacta 417
|| |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 ctccaatgtaaaggtattctaacattctcttc-aagaaaagtatgattaaggtacaacta 618
Query: 418 tatacctcaggaaacgttacagctagagagaaattttaatgtagtacaagtagactcagt 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 619 tatacctcaggaaacgttacagctagagagaaattttaatgtagtataagtagactcagt 678
Query: 478 ctaagtatatggatatggatatattttcttatactatagatgcaattcagtagaacttat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctaagtatatggatatggatatattttcttatactatagatgcaattcagtagaacttat 738
Query: 538 caggaataaaatctactcttaggtaaaataactcaaatttcataaattgcatgtatgttt 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 739 caggaataaaatctactcttaggtaaaataactcaaatctcataaattgcatgcatgttt 798
Query: 598 tctttatgacttcaaaaaggtagaaaaaatgagaaaaaattgatagaatgaaacatgtaa 657
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 799 tctttatgacttcaaaaaggtagaaaaattgagaaaaaattgatagagtgaaacatgtaa 858
Query: 658 cctaaaaata 667
||||||||||
Sbjct: 859 cctaaaaata 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space: 701982
Effective search space used: 701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_p09.g1 MSMg01no386_p09.g1 CHROMAT_FILE:
MSMg01no386_p09.g1 PHD_FILE: MSMg01no386_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:52 2005
(664 letters)
>mm_chr2_86275335_86276397
Length = 1063
Score = 1104 bits (571), Expect = 0.0
Identities = 583/587 (99%), Gaps = 1/587 (0%)
Strand = Plus / Minus
Query: 1 catgtcatgtttgcaagatgtactatatagatttatataatttcatatgtattaatttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 catgtcatgtttgcaagatgtactatatagatttatataatttcatatgtattaatttag 527
Query: 61 acatgtacgtctttctgtatagcaaatttctcatatcctgagagtattaatagacttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acatgtacgtctttctgtatagcaaatttctcatatcctgagagtattaatagacttaat 467
Query: 121 cactctttagctagatgttatatgtaggaggatattctccagatttaaatgtttaatatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 466 cactctttagctagatgttatatgtaggaggatattctccagatttaaat-tttaatatt 408
Query: 181 gaattgaactggctcttatcattatagttaggaaaagcaaatattattttaaacgactta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaattgaactggctcttatcattatagttaggaaaagcaaatattattttaaacgactta 348
Query: 241 gattattctctaattaagactttcattgggtgaggatcattgatgcatatctgtgttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gattattctctaattaagactttcattgggtgaggatcattgatgcatatctgtgttttt 288
Query: 301 ccagctacatgtctgtatctctttgtgtatttatatgcaaaagagtatgtgtatgcataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccagctacatgtctgtatctctttgtgtatttatatgcaaaagagtatgtgtatgcataa 228
Query: 361 aaatatgtgtatgtcttagaaatagactaattttgaaaaataaataaaaatatttggaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 227 aaatatgtgtatgtcttagaaatagactaattttgaaaaataaataaaaatatttagaga 168
Query: 421 tattttattgaagctactttgaatactatggtattgaaaatctattcaaagtgcaaatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tattttattgaagctactttgaatactatggtattgaaaatctattcaaagtgcaaatgt 108
Query: 481 ctctactcaaaacaggacttccataaacctgaatagagaagcacaacctcacaatggtga 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ctctactcaaaacagaacttccataaacctgaatagagaagcacaacctcacaatggtga 48
Query: 541 ctgaattaatcctggtgggcatcactgaccgccctgagctgcaggcc 587
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 47 ctgaattcatcctggtgggcatcactgaccgccctgagctgcaggcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
