BAC Information

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BAC

Clone NameMSMg01-387G03
Chromosome2 (Build37)
Map Location 153,364,578 - 153,364,962
singlet/doubletsinglet
Overlap genenone
Upstream geneDefb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387G03.T7 (MSMg01no387_g03.b1)MSMg01-387G03.TJ (MSMg01no387_g03.g1)
ACCAG490128AG490129
length791769
length of high quality
(start - end)		140 (82 - 221)385 (85 - 469)
definitionCHROMAT_FILE: MSMg01no387_g03.b1 PHD_FILE: MSMg01no387_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:25 2005CHROMAT_FILE: MSMg01no387_g03.g1 PHD_FILE: MSMg01no387_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTATTTGCGGCGCTAATAGATTCACTATATTTCAGAGGATCCGCGGAA
TTCCAATACTTTTAGGCTGATGCAGGGGGATTGCTGAGGCTAGCCTGGGG
TACTGAGTGGGATTCTAGCTTCAAAAAGCAAAATAATAGCCACACATAGT
GGTACACACTCTTGGGAGGCAGAGGCAGGTGGATCTGAGTTTGAGGCCAG
TGTACTCTTCAGAGTGAGTTCCAGGACCGCCAGGGCTACACAGAAAGACC
CTGTCTCAAAACAACACCAGCAGCAGCAGCAACAGCAACCGCAAAACAAT
AACATAAGCAGCCCCAGACAATATCACTTTATAGTGTCAGAAGATCTATG
GTGACTCTGAATGTCTATTCCAGGCATTAAGAGAGATTACAAATTACAAA
TGAGTCTTTAATGAAGAAACTTCTACCACAAAACTTTATTCTGCCAGGAA
ATGTCCTGCCCCCCATTCTCGATAATAACCACCTTAAATCTTTCTTTGAG
GCCATCCCACAGGTCCATTCCAGCGCCACTAATACCCCCTCTATCACCGA
TGGCTCCCCCCCTGCCCGNCCGATCTTTTCGACCCCTTCCTTCTCCATAT
CCCCACCGGAGTCCTCCCCCCTTTACTTTGCTCCACCTTTTTTTACCCAA
ATAACAATACATATTCTTCTTCCCCCCCCTTTCTTATCTCGCCCCGCTCT
AATCGCTTATCTCCTTTTTCCACCCATCCCCCCTCTCCCTTCACCTTCTT
ATTTTTCCTCCCCCCCCCCCCGACCTCTTCTTTCCTTTCAA

CCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCTTGCTACATC
TGAAATCCTGGGCCTAGCACTGGCAGCTTTGTCTCTAGGGACCATGACTC
TTCTGGGGGACCAGAAACCTGTATGCTTAGTATTGCCCGAGAAGGCCAAG
GTCACAGTGAGGCTGGCATAATTTGTTGAGGGCCTACTGTGTGTCAGACA
CTCTGCTAAGTGCTTTCTTGTATATCACTTTAAGAATCAGGTTTAGCTGT
TCGGTTAATGTCATCCAGCTGGCCAGAAGTGGTACAGGGCTTGAGTGCAG
AAGGCTGCTGTGGAGCCCTTTTAATATTTTGATGCAGAAGTGACTGGCTT
CTACTTTGAGGGGCCTGTGTCAGTAGGGTTTCAAGAGAAGAGTGGTAGCT
GAGGAGACGGGAAGTTGGATCCAGGCCCCCGATTTTCTGTTAAGCGTCTG
CCCTCTCTCAGCCTCAGTTTCCCTTCTGAGATGCCGAATTTTGGGTAAAA
TGACCTCCAACTTGTATGCTTCCCCATCCTTTGCGCCTTCTCTTGTCACT
GCTCCTCCTATCCCTTCCTTTTCCCCCTCCCTTCTCTCCCCTTTTACACT
CTCCGCTCTCTCACTTACCCTCTTCGTCCTCCTTTTTCTTCCCTCTCCCT
CTTTCTTCGCTCTCTCTTCCCCCTCCTTCCCCCTTCACTGCCTCTGTTCT
TCTCGCTTCCCTTCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_g03.g1 MSMg01no387_g03.g1 CHROMAT_FILE:
MSMg01no387_g03.g1 PHD_FILE: MSMg01no387_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:25 2005
         (385 letters)



>mm_chr2_153364179_153364963
          Length = 785

 Score =  745 bits (385), Expect = 0.0
 Identities = 385/385 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccttgctacatctgaaatcctgggcctagcactggcagctttgtctctagggacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaggccttgctacatctgaaatcctgggcctagcactggcagctttgtctctagggacca 725

                                                                       
Query: 61  tgactcttctgggggaccagaaacctgtatgcttagtattgcccgagaaggccaaggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tgactcttctgggggaccagaaacctgtatgcttagtattgcccgagaaggccaaggtca 665

                                                                       
Query: 121 cagtgaggctggcataatttgttgagggcctactgtgtgtcagacactctgctaagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cagtgaggctggcataatttgttgagggcctactgtgtgtcagacactctgctaagtgct 605

                                                                       
Query: 181 ttcttgtatatcactttaagaatcaggtttagctgttcggttaatgtcatccagctggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttcttgtatatcactttaagaatcaggtttagctgttcggttaatgtcatccagctggcc 545

                                                                       
Query: 241 agaagtggtacagggcttgagtgcagaaggctgctgtggagcccttttaatattttgatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agaagtggtacagggcttgagtgcagaaggctgctgtggagcccttttaatattttgatg 485

                                                                       
Query: 301 cagaagtgactggcttctactttgaggggcctgtgtcagtagggtttcaagagaagagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cagaagtgactggcttctactttgaggggcctgtgtcagtagggtttcaagagaagagtg 425

                                    
Query: 361 gtagctgaggagacgggaagttgga 385
           |||||||||||||||||||||||||
Sbjct: 424 gtagctgaggagacgggaagttgga 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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