BAC Information

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BAC

Clone NameMSMg01-387H05
Chromosome2 (Build37)
Map Location 82,370,990 - 82,504,260
singlet/doubletdoublet
Overlap geneLOC269292
Upstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550
Downstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387H05.T7 (MSMg01no387_h05.b1)MSMg01-387H05.TJ (MSMg01no387_h05.g1)
ACCAG490180AG490181
length775790
length of high quality
(start - end)		303 (71 - 373)409 (81 - 489)
definitionCHROMAT_FILE: MSMg01no387_h05.b1 PHD_FILE: MSMg01no387_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:30 2005CHROMAT_FILE: MSMg01no387_h05.g1 PHD_FILE: MSMg01no387_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,370,990 - 82,371,291)(82,503,852 - 82,504,260)
sequence
CTCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCATTTTTAGTTCAGCTAAAGTGACATTGATTTACCCCTATATCTT
ATGTAAGTACCTGAAATATATATACAATGCATGCTTAAAGACTGAATACA
GAAGAAATGCTTGACATAAATAAAGCTAAACCTATAAAAAATTCAGATCA
AAATTAATACACCTTTGAGTTATGGCCCATTGTGTTCAAAAAAGTATCTT
GCTTAGATTGAATTACTTTTCTTCATAGGGACACTGAGAAGTTATGTTTT
ATTCAGCAGGAATAAGCAATTTCCTTTCCAATAGACACATACCAGACTCT
AGGACTACAGAAGACATTAATACATAAGGTGTATACAAAATTCTTTTGCA
AGAATTCAATGTTAAATAACATTGAAAGAGATAAGCACAGATAAATTTAC
AGTAATAAATTTATGAAGTTTATATATTTCTTGACTATAATAGTAATTAT
AAGAGCCTTTAAAAAGAATACCTACAAGAGAGCCGGAGACTAGCAAACAC
AGAATTGGATGCTCACAGTCAGCTATTGGATGGATCCAAGGCCCTCCCAT
GGAGGAACTAGAAAAAGTACCCCAGGACCTCAAAGGGATCGGCATCCCTA
TTGGAGGGACATCCCCTGGAATCTTACCCGCCCCCGCCCCGAGCTCATAT
CCCCTATCCGCCCATGAAATACCAAAAAAGGCCCAAGTGGCGCTTCCCCC
GCACAAAAAAACCCCCCTTTCTCCG

NNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGGAGGGCTCTGAAGT
CAGCATATCAAAATGCCTGATGATTTTCTTATTATTTATTACTATTAACG
CATTTATTATTAACTTTGGCTGATTTGTTATGACTTATGTTTTATGTTAA
AATAAAAGTGGGCACTTTATAATAATAAACAGTTATAGTGCCAAAAGAAT
TTTAATTCACATAAAAATACTTAAAGGGAAAACATAGTCTTTGATGGTAT
GGTATTTAATATAAAACACTGCAGTTGACAAGATAATGCTAATTACTTGG
ATATGATAAATTATTTATTTTCCTTTGTTGTATATACTCCACACAAACTA
TGTATAAGACCTATCATCTTACTATTCAAGCTATATCTGGTATGGTTATT
TCATACAATCATGTGGATCATAACCTGCTTTCTCTCTTCAAAGTTGTACC
ATCAGCTTAGCACATTTCACCTCTGAGATAAAGATTATTTAGTCCTTATA
TCTGCCCTCCTTTTATTCCTTTCCTCCGCCCAAAAATTTGGGAAAAATTT
CTCCCCTACCCAAAAATGCCCCCAAATTTTGTTGAACCCTTGGTTGGGCC
CCCCCCACAAACTTTTGTCGTTCAGTCCCCCTATCAGATTGGTCTAATCC
CCCCTCCCCTCTTGGGTGTGTAAAAAAATCCTCAACCCCCCCCCACCCGG
CAATTTCTCCTCCCTCCTCTCTTTTTCTCTTCATCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_h05.b1 MSMg01no387_h05.b1 CHROMAT_FILE:
MSMg01no387_h05.b1 PHD_FILE: MSMg01no387_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:30 2005
         (303 letters)



>mm_chr2_82370790_82371492
          Length = 703

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtgacattgatttacccctatatcttatgtaagtacctgaaatatatatacaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagtgacattgatttacccctatatcttatgtaagtacctgaaatatatatacaatgc 260

                                                                       
Query: 61  atgcttaaagactgaatacagaagaaatgcttgacataaataaagctaaacctataaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcttaaagactgaatacagaagaaatgcttgacataaataaagctaaacctataaaaa 320

                                                                       
Query: 121 attcagatcaaaattaatacacctttgagttatggcccattgtgttcaaaaaagtatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcagatcaaaattaatacacctttgagttatggcccattgtgttcaaaaaagtatctt 380

                                                                       
Query: 181 gcttagattgaattacttttcttcatagggacactgagaagttatgttttattcagcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttagattgaattacttttcttcatagggacactgagaagttatgttttattcagcagg 440

                                                                       
Query: 241 aataagcaatttcctttccaatagacacataccagactctaggactacagaagacattaa 300
           ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aataagcaatttccaatccaatagacacataccagactctaggactacaaaagacattaa 500

             
Query: 301 ta 302
           ||
Sbjct: 501 ta 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no387_h05.g1 MSMg01no387_h05.g1 CHROMAT_FILE:
MSMg01no387_h05.g1 PHD_FILE: MSMg01no387_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:30 2005
         (409 letters)



>mm_chr2_82503652_82504460
          Length = 809

 Score =  745 bits (385), Expect = 0.0
 Identities = 403/409 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctggagggctctgaagtcagcatatcaaaatgcctgatgattttcttattatttatt 60
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 609 actctggagggctctgaagtcagcataccaaaatgcctgacgattttcttattatttatt 550

                                                                       
Query: 61  actattaacgcatttattattaactttggctgatttgttatgacttatgttttatgttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 actattaacgcatttattattaactttggctgatttgttatgacttatgttttatgttaa 490

                                                                       
Query: 121 aataaaagtgggcactttataataataaacagttatagtgccaaaagaattttaattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aataaaagtgggcactttataataataaacagttatagtgccaaaagaattttaattcac 430

                                                                       
Query: 181 ataaaaatacttaaagggaaaacatagtctttgatggtatggtatttaatataaaacact 240
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 429 ataaaaatgcttaaagggaaaacatagtctttaatggtatggtatttaatataaaacact 370

                                                                       
Query: 241 gcagttgacaagataatgctaattacttggatatgataaattatttattttcctttgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcagttgacaagataatgctaattacttggatatgataaattatttattttcctttgttg 310

                                                                       
Query: 301 tatatactccacacaaactatgtataagacctatcatcttactattcaagctatatctgg 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 309 tatatactccacacaaactatgtataagccctatcatcttactattcaagctatatctgg 250

                                                            
Query: 361 tatggttatttcatacaatcatgtggatcataacctgctttctctcttc 409
           |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 249 tatggttatttcatacaatcatgtggattataacctgctttctctcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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