BAC Information

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BAC

Clone NameMSMg01-387I04
Chromosome2 (Build37)
Map Location 97,606,927 - 97,607,275
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043267, Lrrc4c
Downstream geneLOC621146, LOC664974, LOC100042886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387I04.T7 (MSMg01no387_i04.b1)MSMg01-387I04.TJ (MSMg01no387_i04.g1)
ACCAG490226AG490227
length775742
length of high quality
(start - end)
350 (68 - 417)484 (80 - 563)
definitionCHROMAT_FILE: MSMg01no387_i04.b1 PHD_FILE: MSMg01no387_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:35 2005CHROMAT_FILE: MSMg01no387_i04.g1 PHD_FILE: MSMg01no387_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTCTAATTCTCGATCTGTCAACTTATTCCTCTGTGTACTGTAACTG
AGCTCTTTGCATGTAAAAAGTGAAATATAAAGTACAAAGTACACACTAGG
TAATGCAGGTTGCAGAAATCAATTTCCACTTAAGTGTTTAGCAAATACCA
ATCAGAAAGTCTATTATAAGCTTGGTTCCCAGGATCCTTGCTACCTTAAG
TGATATTTAGTTTGTCTTGAATCATAATTCTTTTCATCAATTTTTTTTAA
CCTGGATTTTTGTTTTTGACTTTAGTGAATCTTTACTCCCTTAGGTAAAC
TGAAATTGGAACCCTTCCCTACTGCCTTGTCAGAATTAATAAAGGAATTT
GAATTTTATCCAAATCCACAATCATGTTATTTGATGTTCCATAAGTGCAG
TGCCCATTCCTGGATGCCCACTTGACTATATTTGGAATGAACTATTATCC
ACAATCGGAAGGTTCCATAGTGACCCTCATCTGTAGGCTTGGACAACCTT
ATTTGGACTTCGCCCCGGATATTCTGCCCCCCCACCGTCCCGTTTCCCCC
CACCATTCACTCCCCCCTTCCTAAGGCCACCCATTTTTTCCCCGGGCCCC
TCCCTTTCTTTCTCCCCTCTTTGCCCTGCGCGCCACCCCTCCCCCTTTTT
CCCTCTTTCCTCCTTCCCCCTTCCTCTTTTCCTTTTCCTTTCCTTCCCCC
TCCCCCCCTCCAACCCCTCCTCCTG
CTCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGGGAAATACCGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAACACAATAGATCTTCTTAATGACTGCTAATTTCTCTGTTCTAGATT
GCCAGCATTGAGTATCCCAGTAAAGGATAGGCTTCTCTTTAACAGTTCTG
GTCCACTGTTAAATGAAGATGATTCTTCAGCCCCAGCAAACTCCAAACTT
AGAATCTTAATTAAAAAAAAAAAGTCCCATTATCATTTCAACTTGCCTCT
GAAACTTCACAAGCCCAGCCTCCTTCTTCAGCATTATTCTCACTATTCTT
ATCTTCTAAGAAACTACAGGCCAGCTTACCAAGCATTGAACATTCAATAG
ATTTTCTTGCCATCCTCCCTAGTCAAAACAATCAGGCCTATAGCAGCAAT
ACAACAAAATTCTAGTACCAATTAGTCCTAGGTAACATTTTTCGTGCTGC
AAAGAAATACCATAATTAAAAATTAACTAGGGGAGGAAAGAAGTTATTTG
CCTTACACTTTGATATCACTGTTTCCTCACCCAAAAGAAATCTGGAATGG
TTCTCTCACACGGCATTAATCTGCATTCAAATTTAACGTGACAACCCTCT
CACGCCCCATTGCCTGTTTTTCCATACCCTTTCCTCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_i04.b1 MSMg01no387_i04.b1 CHROMAT_FILE:
MSMg01no387_i04.b1 PHD_FILE: MSMg01no387_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:35 2005
         (350 letters)



>mm_chr2_97606727_97607477
          Length = 751

 Score =  617 bits (319), Expect = 0.0
 Identities = 342/351 (97%), Gaps = 5/351 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtcaacttattcctctgtgtactgtaactgagctctttgcatgtaaaaagtgaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtcaacttattcctctgtgtactgtaactgagctctttgcatgtaaaaagtgaaata 260

                                                                       
Query: 61  taaagtacaaagtacacactaggtaatgcaggttgcagaaatcaatttccacttaagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagtacaaagtacacactaggtaatgcaggttgcagaaatcaatttccacttaagtgt 320

                                                                       
Query: 121 ttagcaaataccaatcagaaagtctattataagcttggttcccaggatccttgctacctt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcaagtaccaatcagaaagtctattataagcttggttcccaggatccttgctacctt 380

                                                                       
Query: 181 aagtgatatttagtttgtcttgaatcataattcttttcatcaatttttttt-aacctgga 239
           |||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 381 aagtgatatttagtttgttttgaatcataattcttttcattattttttttttaacctgga 440

                                                                       
Query: 240 tttttgtttttgactt--tagtgaatctttactcccttaggtaaactgaaattggaaccc 297
           |||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttgtttttga--tggtagtgaatctttactcccttaggtaaactgaaattggaaccc 498

                                                              
Query: 298 ttccctactgccttgtcagaattaataaaggaatttgaattttatccaaat 348
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttccctactgccttgtcagaattaataaaggaatttgaattttatccaaat 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 751
Length adjustment: 9
Effective length of query: 341
Effective length of database: 742
Effective search space:   253022
Effective search space used:   253022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)