BAC Information

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BAC

Clone NameMSMg01-387K03
Chromosome2 (Build37)
Map Location 139,386,489 - 139,386,649
singlet/doubletsinglet
Overlap geneC130053K05Rik
Upstream geneLOC628103
Downstream geneLOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387K03.T7 (MSMg01no387_k03.b1)MSMg01-387K03.TJ (MSMg01no387_k03.g1)
ACCAG490320AG490321
length771750
length of high quality
(start - end)
404 (53 - 456)161 (82 - 242)
definitionCHROMAT_FILE: MSMg01no387_k03.b1 PHD_FILE: MSMg01no387_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:44 2005CHROMAT_FILE: MSMg01no387_k03.g1 PHD_FILE: MSMg01no387_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTCATTATGCCCATGCCGTGTGAGATACTGTGAGATAAATATAT
ACATATATATTTTTAATATTTTTATTACGTATTTTCTTCAATTACATTTC
CAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCACTCCCCTACCCAC
CCATTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAG
TTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATC
TTTTGATACATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTGGTTAGTT
CATAATGTTGATGCACCTACAGGGTTGCAGATCTCTTTAGCTCCTTGGAT
ACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGCTCCATCCAATAGCTAA
CTGTGAGCATCTAATTATGTGTTTTCTAGGCCCCGGCCTATTCTCACAAG
AGACAGCTATATCTGGGCCCTTTCAGCATAACCTTGCTACCGTATGGAAA
GGGGCCCTCCTTTTGGAGGCTAATCATGCCACGGATCCCTGGACATGGGA
GTCTCCAACACGCCCCTTTCTTCTCTCCTTACTTCCCAACTTTGTCCCTG
TACCTCCTCCCCTGGGTGGATTGGTCCCCCCCTCCTAACAACGACCCATA
GTGCCCCCCCCCCCCTCCCCTCTTCCTTTCTTCATTTTTCCCCCCCCCTC
TGCCCCAATCTATCCTATCCN
NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTTAGTACTGACAAA
ATTAGAAACGAGGCTGTAGCATACAGGGCTTACTGCTTGGTGAGAGCACT
GATGTCTTTCCCAGAAGTGTGCTAAGACTTGTCCAGCTCTATGAAATCTA
TCAAGCCGGGAGAAAATTTTCTTGACATTCAATGTTGATTTCNTCAGNTG
GNTCCTCCCAATCCCNNAAAGTAAAAACCGNGTGTCCTTTAGCAATATGT
GGCTTACCATTTAGTTTGATGGNCACCTAAATCCGTAACATTATTCTGGG
TTGGTAGGAATGCCCTTAAAAGCCTTCCCCGGAAAAAAAACCCCCCAAGG
GGGAAAACCCCCCCCCCCCCCCCCCCCCCCCACAAAAAAAAAAAAAAAAT
TTTNNCCCGTTAAAAAATTGGGGGCGCGGGGGGGACCCCCTCTCCTCCCC
GCGGGGGGGGAAAAAAAATTTATAAAATTTTTTTTTTTTTTNNNNNNNNN
NNGGGAGCCGCGAGANGGAGNNNNNNNCNNNCGCCCGGGGGTCGGGGGNC
CCGAGGATTNNAANNANNNNNNGGGAACCACCCCCCCCCCCCCCCTCTTT
TTTTTTTTTTCCCAAACAAAAACAACACACANNNNNNNTTTNTCNNNTNN
NNNNCCANAAAGGGGCGCTCCCCCCCCCTTTTTTTCNCGCCCAGTCCTNC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_k03.g1 MSMg01no387_k03.g1 CHROMAT_FILE:
MSMg01no387_k03.g1 PHD_FILE: MSMg01no387_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:44 2005
         (161 letters)



>mm_chr2_139386289_139386849
          Length = 561

 Score =  304 bits (157), Expect = 2e-87
 Identities = 160/161 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtccttagtactgacaaaattagaaacgaggctgtagcatacagggcttactgcttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtccttagtactgacaaaattagaaacgaggctgtagcatacagggcttactgcttggt 302

                                                                       
Query: 61  gagagcactgatgtctttcccagaagtgtgctaagacttgtccagctctatgaaatctat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagagcactgttgtctttcccagaagtgtgctaagacttgtccagctctatgaaatctat 242

                                                    
Query: 121 caagccgggagaaaattttcttgacattcaatgttgatttc 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caagccgggagaaaattttcttgacattcaatgttgatttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)