BAC Information

Click to search

BAC

Clone NameMSMg01-387M20
Chromosome2 (Build37)
Map Location 44,393,453 - 44,393,658
singlet/doubletsinglet
Overlap genenone
Upstream geneKynu, Arhgap15
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387M20.T7 (MSMg01no387_m20.b1)MSMg01-387M20.TJ (MSMg01no387_m20.g1)
ACCAG490449AG490450
length865790
length of high quality
(start - end)
207 (45 - 251)404 (74 - 477)
definitionCHROMAT_FILE: MSMg01no387_m20.b1 PHD_FILE: MSMg01no387_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:58 2005CHROMAT_FILE: MSMg01no387_m20.g1 PHD_FILE: MSMg01no387_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTCGCTAGATACTAAATTGAAATTTTAAGGAAATGATGGAAACGGCTG
GAAGGGAAAGAGGTAGCCTTTTAAATCTAATTTGTTATGCACCGCAGCAG
GGTAATGGATGCAATGAGAGGTCTTTTATGGAGTTCCCACGTCCAAAAGG
TATTTTGGTAGCAAAGGTTGTTAAGCAGACTCCCTACGGTTCTCTTCAAC
TGAAGATGGTAGGGCATGACGTATACAGGCCTGCGTCCCCCTGCTTTTCC
TTTCTCTGCCTTTTTTCTGGCCTATCATTCCCTTTTCCCGCTTAGCACCC
ACTTTTGGCCCGCCCTATCCCTCTTTGTCCGCCTGACTCCATCACGCATC
TCGTAGCTCCTCCTTGTCCTTTTCCCCTTATTTACTATCCTTCATCTAGC
CTCTCCCCTTTCATCCCCTCTCGCCTCCAGTTCCCTCCCCTTCTCTCTTT
CTCTTTCTTTTCTTTCGCCCCTTTTTTTTCCTTCCATCCCCTCTCCCCCT
TCCCTTCCCTTTTTTTCCATTTCCCCCCGCTCCTCCTTTCTTTTCTCCCT
TATCCATTTTTTCCCTCCTTTTCCCTCCCTTTTTCGTTCTCCTCCCTCCC
TCCCTTTCTCTCCCTTTCCTCCCTTTTTTCCCCCCCTCGCCTCCCTTTTT
CGCCCATTTTCCCCTCCCTTTTGCCCCCCTTCCTTTCCCCCTTTCCCTAC
CCTTTCTCTTTCCCGCCCCTTTTCTCTTTTTTCTCTTTTTCTCCCCCCTT
GTCCCCTCTTTCCTTCTTTTCGCCACTTCTTTTTCCCACTCCGCTCGTTT
CTCCACTTTTTTTTG
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTATATATTGGATATTAGTCCTCT
TTCTGGTGTAGCATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCAGTT
TTGTCCTATTGACGGTGTTCTTTGCCTTTCAGAAGCTCTGCAATATTATG
AGGTCCCATTTGTCAATTCTTGATCTTAAAGCATAAGCTATTTGTATTCT
GTCCAGGAAATTTTCCTCTGTGCCCATGTGTTCAAGGCTCTTCCCCATTT
TCTTTTCTGTTAGTTTCAGTGTGTCTGGTTTTATGTGGAGAAAGAAATTG
AAGAAGATCTCAGAAGATGGAAAGATCACCCATATTCATGGACTCTGGCA
GGATTAATGTAGTAAAATGGCCATTGTGCCAAAAGCAATCTACAGATTCA
GTGCAATCCTCATCAAAATTCCAACTCAATTCTTCAGAGTTAGAAAGGGC
AATTTCCAAATACATCTTGGAATAACAAAAAACCCACGATTTGCTTAAAC
TATTCTCAACAATAAAACAAATTTTTGGGAAAACACCAATTATTGTTGTT
TTTAAACTACCCCCCACTATTGGGGTTAACCTTTTAACAAACCTATTAAA
ACTTCCATATACAATTTTTACTATTACTTCTGCTGGGTAATTTACCCACC
TCTTACATACACCCTGTTATCCATAAGATGTTTTATGTTCCCTTTTTTCC
CCATACATCTTATATATCTTCTCCCTTCTCTCCCCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_m20.b1 MSMg01no387_m20.b1 CHROMAT_FILE:
MSMg01no387_m20.b1 PHD_FILE: MSMg01no387_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:58 2005
         (207 letters)



>mm_chr2_44393252_44393858
          Length = 607

 Score =  391 bits (202), Expect = e-113
 Identities = 205/206 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattctgtcgctagatactaaattgaaattttaaggaaatgatggaaacggctggaagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctgtcgctagatactaaattgaaattttaaggaaatgatggaaacggctggaagg 261

                                                                       
Query: 62  gaaagaggtagccttttaaatctaatttgttatgcaccgcagcagggtaatggatgcaat 121
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 262 gaaagaggtagccttttaaatctaatttgttatgcaccgcagtagggtaatggatgcaat 321

                                                                       
Query: 122 gagaggtcttttatggagttcccacgtccaaaaggtattttggtagcaaaggttgttaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagaggtcttttatggagttcccacgtccaaaaggtattttggtagcaaaggttgttaag 381

                                     
Query: 182 cagactccctacggttctcttcaact 207
           ||||||||||||||||||||||||||
Sbjct: 382 cagactccctacggttctcttcaact 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)