BAC Information

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BAC

Clone NameMSMg01-388A08
Chromosome2 (Build37)
Map Location 123,228,226 - 123,402,932
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388A08.T7 (MSMg01no388_a08.b1)MSMg01-388A08.TJ (MSMg01no388_a08.g1)
ACCAG490617AG490618
length780758
length of high quality
(start - end)
541 (34 - 574)558 (81 - 638)
definitionCHROMAT_FILE: MSMg01no388_a08.b1 PHD_FILE: MSMg01no388_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:15 2005CHROMAT_FILE: MSMg01no388_a08.g1 PHD_FILE: MSMg01no388_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,228,226 - 123,228,763)(123,402,375 - 123,402,932)
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTGTT
CTAACTCCCATAACCAAATGTGATTGCAACAAGTGATGGGGTCTTTGAAA
GAGTAATTAAACTAAATGAGCTAATAATTGTCTGTCCTACCTATATCAAA
ATATTCAGAAACAGGGCTATTGAAGAGGTAATTAAGGTTAAATGGGGTCC
CAGTGGTGGGCCCAACCCTTGTGACTGAATTTAGAGATAAGGCCTAAAGG
GACATAGAGTAAGTTTAAATGAAGCAACTAAAGGTATCTTAATCAAATCT
GACTGGTGTTTTTGAAGAATAAATTTGGATACAAAGAGAGACACCCAAAG
CATACACAGTCCAAAAGGATGACTTTGGGATGGGCAGCAAGTGCTCCCAG
AGCAGTCAGTCCTATAATGGTCTTGGTTTTGGATCCACCTCTTCTGGAAT
AGAGAGAAAATAAACTTCTATTGTATAAGGTGAAACATTGTGATGTCTAT
CATGGTAGTCATTACCCAACCTTCCCCATAAAAATAACTAGAGGACAATA
GGTTTTTAAAATTGTATTATGTTTGTCTTTCCCCTCTCTCTCANTCTCTG
TCTCTGTTTCTGTCTCTCTCTCTCCTATGNATGNATGTATGGATGTATGC
ATGGATGAACGAATGNATGNANGNNNNNNNNNNNNNNNNNNTNNNNNTTN
TNNTNNNTNTTTTTTTTTTTTTTTTTTTNTNNTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTNNTTCTNTTTNNT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTAGCACACAGAAGGT
TCTATACAGGAAGTTCTAGGTTAGATCCCACCACCTCTCCTCAACAAAAC
AAACAAACAGTTAATCCTTTGTCAAGAGCCTATCTGGACAAGAGGAAAAT
GGATTTTCTAAAGTATAGGAGAATGGAAACTAGCATCATAATTAAGTCAA
TTTTCCTTCCTTTCTGGTGAGGATAAAGGATAAGAATAACTCAGAATTAG
CATGTGTGAGTCAAAAAGAGGTCTTATGATCAGTCCACAAGAAACATTGC
AGAAAACTTCAGAGGGAAAATGTTCTCTAGCAAGGAAGAGCAGCAGAGAC
TACTGAAACAGAGTGAGCCATCCAGGGAGACAGCCCTGACGGTGCTTATG
ATATACACTGCAAAGCCTGGAAATGGGCAAGTGACTTCCACAGGTGTAAA
CCCACTCTCAAGTTGGAGTAGTGGAAAGCTGATGGCAGGATGATCAGAAA
GGCACACATGAAGAANAGGAATCGTCCTTCACTTGTCTGATTCTTGTTTC
TCCCACACTGCTGTTACATACCTTGAACCATTCCCTGTGGCCTAGTTTCT
TCTCATGTGAATGGAGATGGAAAAGCATATGCCAGCTGTCTCACAGGATC
CCTTGAAAGATTGCAACAGCACAATGGGGTTGGCTCCCTATGATGTCAAA
ATAAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_a08.b1 MSMg01no388_a08.b1 CHROMAT_FILE:
MSMg01no388_a08.b1 PHD_FILE: MSMg01no388_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:15 2005
         (541 letters)



>mm_chr2_123228023_123228963
          Length = 941

 Score = 1040 bits (538), Expect = 0.0
 Identities = 538/538 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacttgttctaactcccataaccaaatgtgattgcaacaagtgatggggtcttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacttgttctaactcccataaccaaatgtgattgcaacaagtgatggggtcttt 263

                                                                       
Query: 64  gaaagagtaattaaactaaatgagctaataattgtctgtcctacctatatcaaaatattc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaagagtaattaaactaaatgagctaataattgtctgtcctacctatatcaaaatattc 323

                                                                       
Query: 124 agaaacagggctattgaagaggtaattaaggttaaatggggtcccagtggtgggcccaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaaacagggctattgaagaggtaattaaggttaaatggggtcccagtggtgggcccaac 383

                                                                       
Query: 184 ccttgtgactgaatttagagataaggcctaaagggacatagagtaagtttaaatgaagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccttgtgactgaatttagagataaggcctaaagggacatagagtaagtttaaatgaagca 443

                                                                       
Query: 244 actaaaggtatcttaatcaaatctgactggtgtttttgaagaataaatttggatacaaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actaaaggtatcttaatcaaatctgactggtgtttttgaagaataaatttggatacaaag 503

                                                                       
Query: 304 agagacacccaaagcatacacagtccaaaaggatgactttgggatgggcagcaagtgctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagacacccaaagcatacacagtccaaaaggatgactttgggatgggcagcaagtgctc 563

                                                                       
Query: 364 ccagagcagtcagtcctataatggtcttggttttggatccacctcttctggaatagagag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccagagcagtcagtcctataatggtcttggttttggatccacctcttctggaatagagag 623

                                                                       
Query: 424 aaaataaacttctattgtataaggtgaaacattgtgatgtctatcatggtagtcattacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaataaacttctattgtataaggtgaaacattgtgatgtctatcatggtagtcattacc 683

                                                                     
Query: 484 caaccttccccataaaaataactagaggacaataggtttttaaaattgtattatgttt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaccttccccataaaaataactagaggacaataggtttttaaaattgtattatgttt 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no388_a08.g1 MSMg01no388_a08.g1 CHROMAT_FILE:
MSMg01no388_a08.g1 PHD_FILE: MSMg01no388_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:15 2005
         (558 letters)



>mm_chr2_123402175_123403132
          Length = 958

 Score = 1058 bits (547), Expect = 0.0
 Identities = 555/558 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttagcacacagaaggttctatacaggaagttctaggttagatcccaccacctctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 attcttagcacacagaaggttctatacaggaagttctaggttagatcccaccacctctcc 699

                                                                       
Query: 61  tcaacaaaacaaacaaacagttaatcctttgtcaagagcctatctggacaagaggaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tcaacaaaacaaacaaacagttaatcctttgtcaagagcctatctggacaagaggaaaat 639

                                                                       
Query: 121 ggattttctaaagtataggagaatggaaactagcatcataattaagtcaattttccttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggattttctaaagtataggagaatggaaactagcatcataattaagtcaattttccttcc 579

                                                                       
Query: 181 tttctggtgaggataaaggataagaataactcagaattagcatgtgtgagtcaaaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tttctggtgaggataaaggataagaataactcagaattagcatgtgtgagtcaaaaagag 519

                                                                       
Query: 241 gtcttatgatcagtccacaagaaacattgcagaaaacttcagagggaaaatgttctctag 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtcttaggatcagtccacaagaaacattgcagaaaacttcagagggaaaatgttctctag 459

                                                                       
Query: 301 caaggaagagcagcagagactactgaaacagagtgagccatccagggagacagccctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caaggaagagcagcagagactactgaaacagagtgagccatccagggagacagccctgac 399

                                                                       
Query: 361 ggtgcttatgatatacactgcaaagcctggaaatgggcaagtgacttccacaggtgtaaa 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agtgcttatgatatacactgcaaagcctggaaatgggcaagtgacttccacaggtgtaaa 339

                                                                       
Query: 421 cccactctcaagttggagtagtggaaagctgatggcaggatgatcagaaaggcacacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cccactctcaagttggagtagtggaaagctgatggcaggatgatcagaaaggcacacatg 279

                                                                       
Query: 481 aagaanaggaatcgtccttcacttgtctgattcttgtttctcccacactgctgttacata 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aagaaaaggaatcgtccttcacttgtctgattcttgtttctcccacactgctgttacata 219

                             
Query: 541 ccttgaaccattccctgt 558
           ||||||||||||||||||
Sbjct: 218 ccttgaaccattccctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)