Query= MSMg01no388_b21.b1 MSMg01no388_b21.b1 CHROMAT_FILE:
MSMg01no388_b21.b1 PHD_FILE: MSMg01no388_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:22 2005
(447 letters)
>mm_chr2_104189111_104189957
Length = 847
Score = 849 bits (439), Expect = 0.0
Identities = 445/447 (99%)
Strand = Plus / Minus
Query: 1 caccatgtctacctgtctgctgccatgcttcttgttatgatgataaagaattgaacctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caccatgtctacctgtctgctgccatgcttcttgttatgatgataaagaattgaacctct 743
Query: 61 gaaactgtaagccagttccaattaaatgttttcctttataagaattgccttggtcatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaaactgtaagccagttccaattaaatgttttcctttataagaattgccttggtcatggt 683
Query: 121 gtctcctcatagcagtggaaaccctaactaagacaccttcattggatttatttaattggt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 682 gtctcctcatagcagtggaaaccctaactaagacaccttcattggctttatttaattggt 623
Query: 181 ttcatagctcaactgattcaatacgtaggggaaatgtttgagaacacagacactggaaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctcatagctcaactgattcaatacgtaggggaaatgtttgagaacacagacactggaaag 563
Query: 241 tgtgttccttgtgcatggagcaatgggtgagtcaggcttctcatcaccatggcaaacacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtgttccttgtgcatggagcaatgggtgagtcaggcttctcatcaccatggcaaacacc 503
Query: 301 ccagagaagcaactttggatgagagatttattagactcatatttccactctggggctaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccagagaagcaactttggatgagagatttattagactcatatttccactctggggctaat 443
Query: 361 gggctctggttcttttaggtccatgaaaaggcagaagaagggtgtggcacagggaagcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggctctggttcttttaggtccatgaaaaggcagaagaagggtgtggcacagggaagcca 383
Query: 421 ggagaaaagacaggaacaggaaggacc 447
|||||||||||||||||||||||||||
Sbjct: 382 ggagaaaagacaggaacaggaaggacc 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_b21.g1 MSMg01no388_b21.g1 CHROMAT_FILE:
MSMg01no388_b21.g1 PHD_FILE: MSMg01no388_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:22 2005
(475 letters)
>mm_chr2_103979076_103979951
Length = 876
Score = 855 bits (442), Expect = 0.0
Identities = 466/480 (97%), Gaps = 12/480 (2%)
Strand = Plus / Plus
Query: 1 tatggttcctgaagtcttgatgtagactgtgtaggacagtaagatgcttatctctgtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatggttcctgaagtcttgatgtagactgtgtaggacagtaagatgcttatctctgtcct 260
Query: 61 cattttactaagtggtgactgctctgaaatttgcttttgtatattcttggcagtttggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattttactaagtggtgactgctctgaaatttgcttttgtatattcttggcagtttggca 320
Query: 121 atttgttctctctccatggagagggggtgcccttctgctgtcttcccctcattggctaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgttctctctccatggagagggggtgcccttctgctgtcttcccctcattggctaaa 380
Query: 181 ggtaacttagagggagaagtgtgtaataccatcagatgacactacagtgctaaaagccca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ggtaacttagagggagaagtgtgtaataccatcagatgacactacagtgctaaaagtcca 440
Query: 241 gtt-----tttttgtaagtgtctgcagaaagaagtagattttgattttgatttgactttc 295
||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttccaaat----gtaagtgtctgcagaaagaagtagattttgattttgatttgactttc 496
Query: 296 tttcatggagtagaaaagtggcaagccctttttatgatgggctttgtgtctccagggcca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttcatggagtagaaaagtggcaagccctttttatgatgggctttgtgtctccagggcca 556
Query: 356 atcttcctggaccatgaattctgtgacaggcagacgttgtgacccccccccccttcccca 415
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 557 atcttcctggaccatgaattctgtgacaggcagatgttgtgacccccccc---ttcccca 613
Query: 416 tggaacccttgtcacctaggcatcagtgtctgatgtggtgctcaggaaatgtttgctcaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tggaacccttgtcacctaggcatcagtgtctgatgtggtgctcaggaaatgtttgctcaa 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
