BAC Information

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BAC

Clone NameMSMg01-388C11
Chromosome2 (Build37)
Map Location 54,820,281 - 54,820,844
singlet/doubletsinglet
Overlap geneGalnt13
Upstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388C11.T7 (MSMg01no388_c11.b1)MSMg01-388C11.TJ (MSMg01no388_c11.g1)
ACCAG490716AG490717
length1,447752
length of high quality
(start - end)
---578 (79 - 656)
definitionCHROMAT_FILE: MSMg01no388_c11.b1 PHD_FILE: MSMg01no388_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:25 2005CHROMAT_FILE: MSMg01no388_c11.g1 PHD_FILE: MSMg01no388_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTAATGAAATCAGNCTGGCTGGACAGATGTCCGCATCGNGAGGAGTGC
GCTCTGGGAGCGGCCCTGCTTCTTCACTACCTTCAGGGTATACTATCATC
ACACTGTGCGACGCGCTCTCTCGCGCACTCCGATCAGAGACGCGCGCGAC
GCAAGCATGTTGCGCTGCGACGACGGCGAGTATATACCCACAGCCTACAT
GGTGGCTGGAACATAGTAATACAACTAACCACACACAACACACAGACACA
CCCAGCACATACTCTAAATAAAATTATCATGTAATAGAAAATATTACTGA
ATGTAACGGCGTGTCTCGCTAGATGCGATTTAGTTGTTGAGGAGCCCGCG
CGACACAGAGACACAGCACTCACTACTTGTTAGCCGTGCTAACATCCATG
CTACAGAGTGTGCGACGCTTTGGTTGTGCACGCATGGCTCTCTGTCGCTC
TCGCGCATACTCGCACCACACGCAGCGACCCACCCGCGGCACATCACGAC
CTCCTTCTCGCTTCCGTGATNCTCGTCCTGACGGTATGACACGTAATAGC
AGGGAGTGTCTATCTCACATGCGGCCGTACCTCCCACCGCTGCTGTCGCG
CGTTCATATGACGTAACTCGTGTCCAGCGTCGTGTCCTACTCCACTNACC
ACACNGATCAAATAAACCTACCAAGTCGTAGACAGCTAACAACACACAAC
CGCGATCGAGTGTGATTTACGTCACATGTGTCGAGACTGAGCGAGGGCAG
TATAACACCGTGCATCCGATATACGCCAACNCGAACATCGATAGAGCGTA
TCGTAGAGTCTCCATTCACTTACGTCACCACGCAGCCTCTATACACTCGC
TGCACTGCCCTGAGTGTGCGATAATACTCACAGATCGCTCTGACACTAGA
CGATAAGTAAAGCGACAGATACGACTGAGGATTCTAATATATACTCCTTT
ACTGACTCTCAGGCCGATCTCAACAGTAAGACACTCATCATGTAATGACG
CTGCTAGAGGCACGTACCATCATCACTCTCCTACACCTCTAGATCAACAC
ATACTACACCAAGCGAGAGTAGCAGGTGCCGAGTCAGTGATATATCTCAG
TACGACTTCTCGGATCATACCACTAGCCACAAGCGTCGCCGCGATCATGT
CGCGGTGTATTACAGACCTGAGCGTACGATGCAGATTCATAATCTGATCC
GTAACACCGATCAAGACGCGCATAATGCATCGTAGCGGTATTATATTACA
ATAGAGAAGTGTTATACATTCACGCGATAGAGCGAAGTTGTGTTAACGAG
TTACGTGTCTTACTTACCTGCGATAGGAGNACANGCGCCTATGCACATAN
ANATCGTCAGAGTCACATGATTGTCTAGACGCGAGCAGTGTGAGTAGTCG
ATATGCATCGAGCGTGACTCGTTGCTATGACGCTGTGCGCGGCCACC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGACTTCTAAGATGAATAGA
CATTAACCTCAGAAAGGAGAAAATAGTCAGGGAAATGTAGTTTTTTTGAT
GGAAAACCACAGCTTATGCCTGCAGAGAATTAGGAGTGAGCATGAAGCTG
TCGAAGAACTAAGAAGAAAAATAATTCAATTGGAAGAGTTTAGCACCAGC
ATGGGTTCTCAAAGGCAATTGCTTGCCAGTGAAGGACACAAAAGGAGATT
GAATCACTTCAGCACTTACACTATTTCAACAACAACAACAACAACAACAA
CAAAAAGGCAGAGTGGGGAGATGATTGGAGACTGCACTATGGGTTTCTGT
GAAACAAAAAAATAAAATTTAGTTGTTGTGAATACTTGCTTAATGATCAT
GGGAGAAACATGAAAAGTCTAGAACTATTTTAGAGGTAGAAACAATAACA
TATAGTGAAAATTTGAAACTTCAATTGGGGAGGTGGGGTTTGACGGCATA
AAGTGATAATTTCTGATGAAAGCTAAAAGGTATATTATCCTTCCTTTTAC
TCCAGNGATACATCATCCAGCTACACACACACACACACACACACACAGGT
TTAATATTTTAGCCTGTGATAGGTGACAACATAGATTTGAAAGCCCTGAG
TATTCCCCATTGCTTGCTGAGTTATATCTAAGGATATTATTTTTTTCGAT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_c11.g1 MSMg01no388_c11.g1 CHROMAT_FILE:
MSMg01no388_c11.g1 PHD_FILE: MSMg01no388_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:25 2005
         (578 letters)



>mm_chr2_54820084_54821061
          Length = 978

 Score = 1017 bits (526), Expect = 0.0
 Identities = 553/567 (97%), Gaps = 9/567 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgacttctaagatgaatagacattaacctcagaaaggagaaaatagtcagggaaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 198 attgacttctaagatgaatagacattaacctcagaaaggagaaaatagtcaggaaaatgt 257

                                                                       
Query: 61  agtttttttgatggaaaaccacagcttatgcctgcagagaattaggagtgagcatgaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 258 agtttttttgatggaaaaccacagcttatgcctgcagagaattaggaatgagcatgaagc 317

                                                                       
Query: 121 tgtcgaagaactaagaagaaaaataattcaattggaagagtttagcaccagcatgggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgtcgaagaactaagaagaaaaataattcaattggaagagtttagcaccagcatgggttc 377

                                                                       
Query: 181 tcaaaggcaattgcttgccagtgaaggacacaaaaggagattgaatcacttcagcactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcaaaggcaattgcttgccagtgaaggacacaaaaggagattgaatcacttcagcactta 437

                                                                       
Query: 241 cactatttcaacaacaacaacaacaacaacaacaa------aaaggcagagtggggagat 294
           ||| |   |||||||||||||||||||||||||||      |||||||||||||||||||
Sbjct: 438 cacaa---caacaacaacaacaacaacaacaacaacaacaaaaaggcagagtggggagat 494

                                                                       
Query: 295 gattggagactgcactatgggtttctgtgaaacaaaaaaataaaatttagttgttgtgaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gattggagactgcactatgggtttctgtgaaacaaaaaaataaaatttagttgttgtgaa 554

                                                                       
Query: 355 tacttgcttaatgatcatgggagaaacatgaaaagtctagaactattttagaggtagaaa 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tacttgcttaatgatcatgggagaaacatgaaaagtctagaactattttagaggtagaaa 614

                                                                       
Query: 415 caataacatatagtgaaaatttgaaacttcaattggggaggtggggtttgacggcataaa 474
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 615 caataacatatagtgaaaatttgaaacttcaattggggacgtggggtttgacggcataaa 674

                                                                       
Query: 475 gtgataatttctgatgaaagctaaaaggtatattatccttccttttactccagngataca 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 675 gtgataatttctgatgaaagctaaaaggtatattatccttccttttactccagtgataca 734

                                      
Query: 535 tcatccagctacacacacacacacaca 561
           |||||||||||||||||||||||||||
Sbjct: 735 tcatccagctacacacacacacacaca 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)