BAC Information

Click to search

BAC

Clone NameMSMg01-388J23
Chromosome2 (Build37)
Map Location 120,079,948 - 120,080,343
singlet/doubletsinglet
Overlap genenone
Upstream geneRhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635
Downstream genePla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388J23.T7 (MSMg01no388_j23.b1)MSMg01-388J23.TJ (MSMg01no388_j23.g1)
ACCAG491073AG491074
length781823
length of high quality
(start - end)
428 (53 - 480)315 (78 - 392)
definitionCHROMAT_FILE: MSMg01no388_j23.b1 PHD_FILE: MSMg01no388_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:00 2005CHROMAT_FILE: MSMg01no388_j23.g1 PHD_FILE: MSMg01no388_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXACGGACGCTTGCTTGATCTGTAGAGGTAGTATTTCCTGACTTGCCAAT
AATACTTTGGATTACATTGCCATTTTCTTGGAACCCCAGACCCATCTCTA
ACATGGAAGATTTGAGTTTGGTTCCCAGCACCCATATAGAGTACCTTACA
ACCATGTTAAATTCTAGTTCTAGAGGATCTAGTGGCCTCTGTGAGCACCT
ACTCCTGTGTACAGACCTATACACAAGTAAAATAACGAGAAAAATTAGTT
TACTAAAGAGTACCTAACTAGCTATTTTGGAGGACCTACATTCAATTCTC
AAGACTGGAGGAAAGGGTATATTGCAAGAATCTGGGTGCATTGACCTGCG
AGGGTAAGCTGAAATAATGTAGCATTTGTATCTCCCATGGAAGTGCTCCT
TTCCATACTCCTCTGTTGACAACTTCTGCCCTGTGGCCTTGGGTGGCAAG
GGTGTGATCAGGACTAGCTTATCTCAGNATGTCATCTCCTTGGCACTGGG
CAGACACCTTGCTCAGGGGAGATGATCACAGCCTGTTAATAAATGTCTCT
TGATGCTGGATTTGCCGATGTAACCAGACCAGAGCCCTGTTGCTCTCCTC
CCAGGTCCGGGCCTCCTCCACCCCAAAACCTCCATTTCCCCCGGGTCGGT
TGGGGAGGTTTCCCCCAGCAGAAATTTCTTGCCCGGGCTTGAAACCCCCG
CGCTTTGTCTCCCTGGACCCTAAAAAAAAGG
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCCCGGGGTCTAGCAAACAC
AGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAAT
GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTAT
AGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTA
GCTGCATATGTATCAAAAGATGGCCTAGCCGGCCATCACTGGAAAGAGAG
GCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGG
GCTAAAAAGTGGGAGTGGGTGGATAGGTGAGAGGGGGAGGNTNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTTTNNTTT
TTTTTTNNNTNTTNNNTTTTTNTTTTTTTTNNTNTNTTTTTNTTTTTTTT
NTTTTTNNTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTNNTNTTTT
TTTTTTTTTTTTTTNTNNTTNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_j23.b1 MSMg01no388_j23.b1 CHROMAT_FILE:
MSMg01no388_j23.b1 PHD_FILE: MSMg01no388_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:00 2005
         (428 letters)



>mm_chr2_120079516_120080343
          Length = 828

 Score =  766 bits (396), Expect = 0.0
 Identities = 396/396 (100%)
 Strand = Plus / Minus

                                                                       
Query: 33  ttcctgacttgccaataatactttggattacattgccattttcttggaaccccagaccca 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttcctgacttgccaataatactttggattacattgccattttcttggaaccccagaccca 769

                                                                       
Query: 93  tctctaacatggaagatttgagtttggttcccagcacccatatagagtaccttacaacca 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tctctaacatggaagatttgagtttggttcccagcacccatatagagtaccttacaacca 709

                                                                       
Query: 153 tgttaaattctagttctagaggatctagtggcctctgtgagcacctactcctgtgtacag 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgttaaattctagttctagaggatctagtggcctctgtgagcacctactcctgtgtacag 649

                                                                       
Query: 213 acctatacacaagtaaaataacgagaaaaattagtttactaaagagtacctaactagcta 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acctatacacaagtaaaataacgagaaaaattagtttactaaagagtacctaactagcta 589

                                                                       
Query: 273 ttttggaggacctacattcaattctcaagactggaggaaagggtatattgcaagaatctg 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttttggaggacctacattcaattctcaagactggaggaaagggtatattgcaagaatctg 529

                                                                       
Query: 333 ggtgcattgacctgcgagggtaagctgaaataatgtagcatttgtatctcccatggaagt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ggtgcattgacctgcgagggtaagctgaaataatgtagcatttgtatctcccatggaagt 469

                                               
Query: 393 gctcctttccatactcctctgttgacaacttctgcc 428
           ||||||||||||||||||||||||||||||||||||
Sbjct: 468 gctcctttccatactcctctgttgacaacttctgcc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)