BAC Information

Click to search

BAC

Clone NameMSMg01-388N03
Chromosome2 (Build37)
Map Location 39,816,889 - 39,817,220
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388N03.T7 (MSMg01no388_n03.b1)MSMg01-388N03.TJ (MSMg01no388_n03.g1)
ACCAG491224AG491225
length778762
length of high quality
(start - end)
527 (35 - 561)339 (79 - 417)
definitionCHROMAT_FILE: MSMg01no388_n03.b1 PHD_FILE: MSMg01no388_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:14 2005CHROMAT_FILE: MSMg01no388_n03.g1 PHD_FILE: MSMg01no388_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTACA
CAGCTGCCCATTGTTGGGTTAGTTGGACTACAGACTGTAAGTCATTACAA
TAAATTCCCTTAATATACAGAGACATTCCATAAGTTCTGTGACTCTGGAG
AACCCTGATTAATGCAGTAATGTTATTTGGAAATAACTTTTGAGTTTTTC
CTTTATTATTTTTATCCCCTTTATCTATTTCACTTGTCTTATTGCTCTGG
CTATGACTTCAAGCACTATACTGAATGAGAGGAAAGAGAATGACATCATT
GTCTTGTTCTTGGTTTTATTGGAAACATTTTATCTTTTGTCTGTTTAGTA
TGATATTGATTTTGGAGTTGCTTATTTTGCTTTTATTATGGTGAGATATG
TTCTTCGCGGCTAGACTTTCTGGGACTTTTATCATGAAAGTATGTTAGAT
TTTGTAAAAGGCATTTTCTGTATTGAATGAGATGATCACGTGGTTTAGCC
TTTGAGTCTATTTATATAGTAGATTACCTTTATTGAATCACATATTTTTG
TATTTATGTTTATCAGAGATATTGTTCCCTAATTTTATCTTTATTTTATG
GCCTATTCGCCAACTTTGACATCACCGCCAATACCGGCCTTCCTTAAAAG
TATTCCTAAAATGGTTTCCGGCCTTTCTGATTATATTAAAATCAATTTTT
TGAATCGGCCATCTTCTATTTCCCTTCTTGCAGAACCTGGCCCAAACGCA
CCTGCTCTAGATAATCCCTCCTTCCTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGCATCTAATCCAACTTTC
AGGACTTAATAAACAGATAAAACTGTGACAGCTATCAAAATTGAAAGATA
TATATGTATGTATGTATGTATATGTGTATACATATACATATACACATATA
CATACATACATATGTGTCTGTATATATATTTGCTGTGTGGCAAAAAGGAG
GAGGAAAGGGAGAATCTTGTTAAAAGTTTAAAATGAGAACATAGCTGCAT
TATGACAGATGTCCCCCACTGATTTTTTGAAAGTGAGAGATGACATATCA
CCCAAACCAAGGTTAATGAGATGTAGCTGCCTTCAAGCTTGTGGCAGTGA
GAATGGCTGCTGAAGAACACCCCGTCTGTGTGAAAACACAGGGGAGCTCA
GTAGTTGGGCTGTATGTCTCCACGTGTGGAACCAGGTCTGGGTTCTCCAG
ATGCTGAGAAGTAGAAGTGAAACAGCTTCTCCCTCTTTCGTGAGGTGCTT
GTACTTTCCTCCCTTGTTGAGTCTCTGTGGAGTCTGTAATGCGAGGCTAA
ACACTTTGACTCAATGTACTATGTAAAAACTTCTTGCGAAATCTTCCGAA
GCATAAAACTCCTCCGATGTGGGTTACTTACTACCTTTACATTCCGCTTA
GTAACTCCGTCAAGCTTTATGGCTCCCCCTATTTCTCCTAACCCCTATAC
TCTCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_n03.g1 MSMg01no388_n03.g1 CHROMAT_FILE:
MSMg01no388_n03.g1 PHD_FILE: MSMg01no388_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:14 2005
         (339 letters)



>mm_chr2_39816535_39817273
          Length = 739

 Score =  522 bits (270), Expect = e-152
 Identities = 319/340 (93%), Gaps = 9/340 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgcatctaatccaactttcaggacttaataaacagataaaactgtgacagctatcaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 686 tattgcatctaatccaactttcaggacttaagaaacagataaaactgtgacagctatcaa 627

                                                                       
Query: 61  aattgaaagatatatatgtatgtatgtatgtatatgtgtatacatatacatatacacata 120
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aattgaaagatata--------tatgtatgtatatgtgtatacatatacatatacacata 575

                                                                       
Query: 121 tacatacatacatatgtgtctgtata-tatatttgctgtgtggcaaaaaggaggaggaaa 179
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 574 tacatacatacatatgtgtttgtatattatatttgctgtgtggcaaaaaggaggaggaaa 515

                                                                       
Query: 180 gggagaatcttgttaaaagtttaaaatgagaacatagctgcattatgacagatgtccccc 239
            ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 514 aggagaatcttgttaaaagtttaaaatgagaatatagctgaattatgacagatgtccccc 455

                                                                       
Query: 240 actgattttttgaaagtgagagatgacatatcacccaaaccaaggttaatgagatgtagc 299
           |||||  |  ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 454 actgagatgctgaaagtgagagatgacatatcacccaaaacaaggttaatgagatggagc 395

                                                   
Query: 300 tgccttcaagcttgtggcagtgagaatggctgctgaagaa 339
           |||||||||| |||||||||||||||||||||||||||||
Sbjct: 394 tgccttcaagattgtggcagtgagaatggctgctgaagaa 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)